View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14778_low_5 (Length: 454)
Name: NF14778_low_5
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_5 |
 | |
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| [»] scaffold0288 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 1968738 - 1969178
Alignment:
| Q |
14 |
atgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968738 |
atgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtc |
1968837 |
T |
|
| Q |
114 |
tggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttagg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968838 |
tggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttagg |
1968937 |
T |
|
| Q |
214 |
tttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1968938 |
tttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacact |
1969037 |
T |
|
| Q |
314 |
ttgcagtttttacc------atctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcaca |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969038 |
ttgcagtttttaccatctggatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcaca |
1969137 |
T |
|
| Q |
408 |
actcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969138 |
actcaattggtggattcttgactcattgtggctggaattca |
1969178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 2008277 - 2007843
Alignment:
| Q |
14 |
atgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtc |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2008277 |
atgaaagaggagggaggtgacaaccctccagtgtatcctgttggacctattatcgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtc |
2008178 |
T |
|
| Q |
114 |
tggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttagg |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||| || |
|
|
| T |
2008177 |
tggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacactttcacaggagcaaattgtggagctagctttggg |
2008078 |
T |
|
| Q |
214 |
tttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacact |
313 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2008077 |
tttggaattgagtaatacaaaattcttgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacact |
2007978 |
T |
|
| Q |
314 |
ttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007977 |
ttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcag |
2007878 |
T |
|
| Q |
414 |
ttggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |
|
|
| T |
2007877 |
ttggtgggttcttgacgcattgtggctggaattca |
2007843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 2004897 - 2004463
Alignment:
| Q |
14 |
atgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtc |
113 |
Q |
| |
|
|||||||| || |||||||| |||||||| ||||||||||||||||| || |||| || | |||||| ||||||| | | |||| ||||| |||| |
|
|
| T |
2004897 |
atgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttggacccatcatcccgacgatagaaagttccggtgatgctaatcatgggttggaatgtc |
2004798 |
T |
|
| Q |
114 |
tggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttagg |
213 |
Q |
| |
|
| | ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
2004797 |
taacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttggg |
2004698 |
T |
|
| Q |
214 |
tttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacact |
313 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
2004697 |
tttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaaaatgatgctgacact |
2004598 |
T |
|
| Q |
314 |
ttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaa |
413 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2004597 |
tggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcctaagtcacaactcag |
2004498 |
T |
|
| Q |
414 |
ttggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
| || || ||||||||||||||||||||||||||| |
|
|
| T |
2004497 |
tcggcgggttcttgactcattgtggctggaattca |
2004463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 2011887 - 2011463
Alignment:
| Q |
19 |
agaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcc |
118 |
Q |
| |
|
|||||| ||||||| ||||||| | || |||||||||||||| || ||||| |||| |||| |||| | ||||||||||||||| |||||||||||| | |
|
|
| T |
2011887 |
agaggaaggaagtggcaacccttctgtctatcctgttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtca |
2011788 |
T |
|
| Q |
119 |
tggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttgg |
218 |
Q |
| |
|
||||| || ||||| || |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2011787 |
tggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttgg |
2011688 |
T |
|
| Q |
219 |
aattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgca |
318 |
Q |
| |
|
||||||||||| | |||||| |||||| |||||||||| ||||| |||||||||| ||||| ||||||||||||| ||||||| |||| |||| || |
|
|
| T |
2011687 |
aattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctaatgcagcatatctttcagcacaaaatgatgttgatgctttaca |
2011588 |
T |
|
| Q |
319 |
gtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggt |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||| || |||||||||||||| ||||| | ||| |||| |
|
|
| T |
2011587 |
atttttaccatctgggtttttggagagaaccaaagaggaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggc |
2011488 |
T |
|
| Q |
419 |
ggattcttgactcattgtggctgga |
443 |
Q |
| |
|
|| ||||||| ||| ||||| |||| |
|
|
| T |
2011487 |
gggttcttgagtcactgtggttgga |
2011463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 1964807 - 1965232
Alignment:
| Q |
19 |
agaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcc |
118 |
Q |
| |
|
|||||| ||||||| ||||||| | ||||||||||||||||| || ||| | |||| |||| |||| | |||||||||||| |||||||||||| | |
|
|
| T |
1964807 |
agaggaaggaagtggcaacccttctgtgtatcctgttggacccatcatcgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtca |
1964906 |
T |
|
| Q |
119 |
tggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttgg |
218 |
Q |
| |
|
||||| || ||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | || || | |
|
|
| T |
1964907 |
tggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaacaaattgttcagctggctctggggttag |
1965006 |
T |
|
| Q |
219 |
aattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgca |
318 |
Q |
| |
|
||||||||||| | |||||| |||||| || ||||||| ||||| |||||||||||||||| ||||||||||||| |||||||| |||| ||||| | |
|
|
| T |
1965007 |
aattgagtaatcagaaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaa |
1965106 |
T |
|
| Q |
319 |
gtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggt |
418 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| | |||||||| |
|
|
| T |
1965107 |
atttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattgga |
1965206 |
T |
|
| Q |
419 |
ggattcttgactcattgtggctggaa |
444 |
Q |
| |
|
|| ||||||| ||| ||||| ||||| |
|
|
| T |
1965207 |
gggttcttgagtcactgtggttggaa |
1965232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 448
Target Start/End: Complemental strand, 2015279 - 2014863
Alignment:
| Q |
26 |
ggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttgg |
125 |
Q |
| |
|
|||||||| |||| || |||||| |||||||||| |||||||||||| ||||| || ||||||||||||||| || || |||||||| ||||||| |
|
|
| T |
2015279 |
ggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttgg |
2015180 |
T |
|
| Q |
126 |
ataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgag |
225 |
Q |
| |
|
| ||||| | |||||| |||||| ||||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2015179 |
acaaacaacggccttgttcagttctgtatgtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgag |
2015080 |
T |
|
| Q |
226 |
taataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagttttta |
325 |
Q |
| |
|
|||| | ||||||| |||||| | || |||| ||| | | || | | ||| | |||||||||||| | ||| ||||| |||| || |||||| |
|
|
| T |
2015079 |
taatcataaattcttatgggttgtaagatcaccaagt---aatacagccaatgctgcatatctttcagc---atctgatgttgaccctttacaattttta |
2014986 |
T |
|
| Q |
326 |
ccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattct |
425 |
Q |
| |
|
|| || ||||||||||||||||| ||||| |||| | |||||| |||||||||| || |||||||||||||| |||||| ||| ||||||| |||| |
|
|
| T |
2014985 |
ccttcagggttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttct |
2014886 |
T |
|
| Q |
426 |
tgactcattgtggctggaattca |
448 |
Q |
| |
|
||||||| ||||| ||||||||| |
|
|
| T |
2014885 |
tgactcactgtggttggaattca |
2014863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 26 - 448
Target Start/End: Original strand, 1963150 - 1963566
Alignment:
| Q |
26 |
ggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttgg |
125 |
Q |
| |
|
|||||||| |||| || |||||| |||||||||| |||||||||||| ||||| || ||||||||||||||| || ||||||||| | ||||||| |
|
|
| T |
1963150 |
ggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttgg |
1963249 |
T |
|
| Q |
126 |
ataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgag |
225 |
Q |
| |
|
| ||||| ||||| |||||||||||||| ||||| || |||||||| |||||||| || |||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
1963250 |
acaaacaatgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgag |
1963349 |
T |
|
| Q |
226 |
taataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagttttta |
325 |
Q |
| |
|
|||| | ||||||| |||||| | |||| || ||| ||| || | | ||| | |||||||||||| | ||| |||| |||| ||||||||| |
|
|
| T |
1963350 |
taatcataaattcttatgggttgtaagagctccaagt---agtacagcaaatgctgcatatctttcagc---atctgatgttgatcctttacagttttta |
1963443 |
T |
|
| Q |
326 |
ccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattct |
425 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| | ||| || |||||||||| || |||||||||||||| ||||||| || |||||||| || | |
|
|
| T |
1963444 |
ccatctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttt |
1963543 |
T |
|
| Q |
426 |
tgactcattgtggctggaattca |
448 |
Q |
| |
|
|| |||||||||| ||||||||| |
|
|
| T |
1963544 |
tgtctcattgtggttggaattca |
1963566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 51 - 448
Target Start/End: Complemental strand, 2018637 - 2018246
Alignment:
| Q |
51 |
ctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagtttt |
150 |
Q |
| |
|
|||||||||||||||||||||| ||| | || |||||||||| |||||| ||| |||||||||| |||||||| |||||||| |||| |||||||| |
|
|
| T |
2018637 |
ctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagtttt |
2018538 |
T |
|
| Q |
151 |
gtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttg |
250 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||||| | |
|
|
| T |
2018537 |
gtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgta |
2018438 |
T |
|
| Q |
251 |
cgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaacca |
350 |
Q |
| |
|
|| |||| ||| | | || | | ||| | |||||||||||| | ||| ||||| |||| || |||||||| || |||||||||||||||| | |
|
|
| T |
2018437 |
agatcaccaagt---aatacagccaatgctgcatatctttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagagaaaaa |
2018344 |
T |
|
| Q |
351 |
aggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
|||| |||| | |||||| |||||||||| || |||||||||||||| |||||| ||| ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
2018343 |
aggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattca |
2018246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 180 - 448
Target Start/End: Original strand, 2436704 - 2436978
Alignment:
| Q |
180 |
tttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgc |
279 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||| |||||| ||||||| | ||||||| |||||| | ||||||| | ||| |||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
280 |
aggata----tc--tttcagcagaaaatgacattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattaca |
373 |
Q |
| |
|
|| ||| || |||||||| ||||||| ||||| ||||||| |||||||||| ||||||| | |||||||||||||| |||| | |||||| || |
|
|
| T |
2436804 |
agcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattcca |
2436903 |
T |
|
| Q |
374 |
tcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||| ||| ||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
2436904 |
tcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattca |
2436978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 2433039 - 2433163
Alignment:
| Q |
26 |
ggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttgg |
125 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| || ||||| ||| ||||||||| | |||||||||||| |||||||||||| | ||||||| |
|
|
| T |
2433039 |
ggaagtgaaaatcctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttgg |
2433138 |
T |
|
| Q |
126 |
ataaacagcagccttgctcagtttt |
150 |
Q |
| |
|
|| | || || |||||||||||||| |
|
|
| T |
2433139 |
atgaccaacaaccttgctcagtttt |
2433163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 447
Target Start/End: Complemental strand, 3778002 - 3777873
Alignment:
| Q |
318 |
agtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattgg |
417 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || |||| || ||| || | | ||||| ||||||| |||||||||||| |||| |||| || |
|
|
| T |
3778002 |
agtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccgg |
3777903 |
T |
|
| Q |
418 |
tggattcttgactcattgtggctggaattc |
447 |
Q |
| |
|
|||||| || || |||||||| |||||||| |
|
|
| T |
3777902 |
tggatttttaacacattgtggttggaattc |
3777873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 105 - 448
Target Start/End: Original strand, 5902402 - 5902742
Alignment:
| Q |
105 |
tggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagct |
204 |
Q |
| |
|
||||||||||| | ||||| ||||||| || ||||| |||||||||||||| ||||| || ||||||||| |||||||||| |||||||||| ||| | |
|
|
| T |
5902402 |
tggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagtt |
5902501 |
T |
|
| Q |
205 |
ggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgac |
304 |
Q |
| |
|
|||| | |||||||||||||||||| | ||||||| |||||| | ||||||| ||||| |||| | |||| | ||||||||||||||||||||| |
|
|
| T |
5902502 |
ggctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtag---ttcagccagtggtgcatatctttcagcagaaaatgat |
5902598 |
T |
|
| Q |
305 |
attgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtc |
404 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||| |||| | |||||| |||||||||| || |||||| ||| || |||| |
|
|
| T |
5902599 |
gttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtc |
5902698 |
T |
|
| Q |
405 |
acaactcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||| ||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
5902699 |
acagatcagttggtggattcttgagtcactgtggctggaattca |
5902742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 105 - 448
Target Start/End: Original strand, 5905886 - 5906226
Alignment:
| Q |
105 |
tggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagct |
204 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||||| |||||||||||||| ||||| || || |||||| |||||||||| ||||||| || ||||| |
|
|
| T |
5905886 |
tggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagct |
5905985 |
T |
|
| Q |
205 |
ggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgac |
304 |
Q |
| |
|
||| | |||||||||||||||||| | ||||||| |||||| | ||||||| ||||| |||| | ||| | ||||||||||||| |||| || |
|
|
| T |
5905986 |
agctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtag---ttcagcatgtggtgcatatctttcagcacaaaacgat |
5906082 |
T |
|
| Q |
305 |
attgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtc |
404 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| || |||||| ||||||| |||| |
|
|
| T |
5906083 |
gttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtc |
5906182 |
T |
|
| Q |
405 |
acaactcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||| ||| ||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
5906183 |
acatatcagttggtggattcttgagtcattgtggttggagttca |
5906226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 3516 - 3554
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3516 |
tcaattggtggattcttgactcattgtggatggaattca |
3554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 448
Target Start/End: Complemental strand, 4461458 - 4461420
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4461458 |
tcaattggtggattcttgactcattgtggatggaattca |
4461420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 4622476 - 4622439
Alignment:
| Q |
411 |
caattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4622476 |
caattggtggattcttgactcattgtggatggaattca |
4622439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 4490152 - 4490186
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaa |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4490152 |
tcaattggtggattcttgactcattgtggatggaa |
4490186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 4557460 - 4557426
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaa |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4557460 |
tcaattggtggattcttgactcattgtggatggaa |
4557426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 4592566 - 4592532
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaa |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4592566 |
tcaattggtggattcttgactcattgtggatggaa |
4592532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 3086755 - 3086721
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaa |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3086755 |
tcaattggtggattcttgactcattgtggatggaa |
3086721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 41511444 - 41511482
Alignment:
| Q |
410 |
tcaattggtggattcttgactcattgtggctggaattca |
448 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
41511444 |
tcaattggtggatttttgactcattgtggttggaattca |
41511482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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