View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_6 (Length: 445)
Name: NF14778_low_6
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 52120602 - 52120788
Alignment:
| Q |
1 |
caatatgagtataatataaaattttctacaatcggttggttgtgctcgaaatcgggtccaaatttttaatttggacaaaagtctatgtttgaacactcag |
100 |
Q |
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| T |
52120602 |
caatatgagtataatataaaattttctacaatcggttggttgtgctcgaaatcgggcccaaatttttaatttggacaaaagtctatgtttgaacactcag |
52120701 |
T |
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| Q |
101 |
gtccaattcgcctgcttcaagttccaatttagacggattcgatttaattagattggttggataaacgggtgggttcaatcggttgat |
187 |
Q |
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| T |
52120702 |
gtccaattcacctgcttcaagttccaatttagacggattcgatttaattagattggttggataaatgggtgggttcaatcggttgat |
52120788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 52120819 - 52120962
Alignment:
| Q |
284 |
taattttaaaattgaacctcagaagagatttaaacagcttttgttttttctttctttaaaattgcggtctttcattctaatcaattttacgtcctaatgt |
383 |
Q |
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| T |
52120819 |
taattttaaaattgaacctcacaagagatttaaacagtttttgttttttctttctttaaaattgcggtcattcattctaatcaattttacgtcctaatgt |
52120918 |
T |
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| Q |
384 |
acaatcaaaatcaatataaatattgatgtcgttcaccattgacc |
427 |
Q |
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| T |
52120919 |
acaatcaaaatcaatataaatattgatgtcgttcaccattgacc |
52120962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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