View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14778_low_7 (Length: 435)
Name: NF14778_low_7
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 16790538 - 16790147
Alignment:
| Q |
18 |
actattcacattgattattttgattttgatttcattgactatgtaaataagttttgcatcattgatcaaatcattgtggttgcttattcttgtaagttat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790538 |
actattcacattgattattttgattttgatttcattgactatgtaaataagttttgcatcattgatcaaatcattgtggttgcttattcttgtaagttat |
16790439 |
T |
|
| Q |
118 |
ccatcttcctctcttcttattctgtaacgtgactttcgatggcaattcatttagaataacaagagatgaagagatataacttgcaggaataagcaaccgc |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790438 |
ccatcttcctctcttcttattctgtaacgtgactttcaagggcaattcatttagaataacaagagatgaagagatataacttgcaggaataagcaaccgc |
16790339 |
T |
|
| Q |
218 |
aacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagaatataaaaccattt |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16790338 |
aacggtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaatattcaatgcaaatagttgaaaatagaatataaaaccattt |
16790239 |
T |
|
| Q |
318 |
acctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaagcgacccttcactatgttc |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
16790238 |
acctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacatgattttaacaattgatccttcactatgttc |
16790147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 173 - 409
Target Start/End: Complemental strand, 16791788 - 16791553
Alignment:
| Q |
173 |
ataacaagagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatc |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
16791788 |
ataacaagagaagaagagatataacttgcaggaataagcaacctcaacggtttgatcaatgactacagaatcaatata-ataatcaatgagatgaaaatc |
16791690 |
T |
|
| Q |
273 |
aaaataatcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
16791689 |
aaaataatcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcat |
16791590 |
T |
|
| Q |
373 |
tgtacatgattttaacaagcgacccttcactatgttc |
409 |
Q |
| |
|
||||||||||||||| | | ||||||||||| ||||| |
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|
| T |
16791589 |
tgtacatgattttaatacgtgacccttcactttgttc |
16791553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 170 - 409
Target Start/End: Original strand, 16616689 - 16616928
Alignment:
| Q |
170 |
agaataacaagagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaa |
269 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||| |
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|
| T |
16616689 |
agaataacaagagaggaagacggataactttcaggaataaacaaccgcagtggtttgatcaatgactacaaaaccaatatacatagtcgatgagatgaaa |
16616788 |
T |
|
| Q |
270 |
atcaaaataatcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactg |
369 |
Q |
| |
|
|||||||| |||||||||||| || |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||| || |||||||||| ||||| |
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| T |
16616789 |
atcaaaatggtcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactg |
16616888 |
T |
|
| Q |
370 |
cattgtacatgattttaacaagcgacccttcactatgttc |
409 |
Q |
| |
|
|||||||||| ||||| ||||| | |||||||| ||||| |
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|
| T |
16616889 |
cattgtacataattttcacaagtaatccttcactttgttc |
16616928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 193 - 391
Target Start/End: Original strand, 16628412 - 16628610
Alignment:
| Q |
193 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
292 |
Q |
| |
|
|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
16628412 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16628511 |
T |
|
| Q |
293 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
391 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16628512 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16628610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 193 - 391
Target Start/End: Original strand, 16637293 - 16637491
Alignment:
| Q |
193 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
292 |
Q |
| |
|
|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
16637293 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16637392 |
T |
|
| Q |
293 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
391 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16637393 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16637491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 16792449 - 16792326
Alignment:
| Q |
20 |
tattcacattgattattttgattttgatttcattgactatgtaaataagttttgcatcattgatcaaatcattgtggttgcttattcttgtaagttatcc |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||| |
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|
| T |
16792449 |
tattcacattgattattttgattttcatttcattgactatgtatataagttttgcatcattgatcaaaccatggcggttgctcattcttgtaagttatcc |
16792350 |
T |
|
| Q |
120 |
atcttcctctcttcttattctgta |
143 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16792349 |
atcttcctctcttcttattctgta |
16792326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 159 - 391
Target Start/End: Original strand, 16792318 - 16792549
Alignment:
| Q |
159 |
gcaattcatttagaataacaagagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtca |
258 |
Q |
| |
|
||||||||| ||||||| |||||| ||||| ||||||| || |||| ||||||||| | ||||||||||||| |||| ||| ||||||||||||| |
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|
| T |
16792318 |
gcaattcatacagaataagaagagaggaagatggataacttacaagaatgagcaaccgccatggtttgatcaatga-tgcaaaacttatatacatagtca |
16792416 |
T |
|
| Q |
259 |
atgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgatt |
358 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||| ||||||||| || |||||||||||||| | | ||||| |
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|
| T |
16792417 |
atgaaatgaaaatcaaaataatcaatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgatt |
16792516 |
T |
|
| Q |
359 |
gatagtcactgcattgtacatgattttaacaag |
391 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |
|
|
| T |
16792517 |
gatagtcattgcaatgtacatgattttaacaag |
16792549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 391
Target Start/End: Original strand, 16790416 - 16790637
Alignment:
| Q |
170 |
agaataacaagagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaa |
269 |
Q |
| |
|
||||||| |||||| ||||| ||||||| || |||||||||||| ||| |||||||||||| |||| ||| || |||||||||||||| || ||| |
|
|
| T |
16790416 |
agaataagaagagaggaagatggataacttacaagaataagcaaccacaatgatttgatcaatga-tgcaaaacttatttacatagtcaatgaaatcaaa |
16790514 |
T |
|
| Q |
270 |
atcaaaataatcaatgcaaatagttgaaaatagaatataaaaccatttaccttttt-atcataagtgaagtgagatacaagattctgattgatagtcact |
368 |
Q |
| |
|
|||||||||||||||| ||||||| |||| | ||||||||| ||||||| ||||| |||| ||||||| ||||||||| | | ||||||||||||| | |
|
|
| T |
16790515 |
atcaaaataatcaatgtgaatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcatt |
16790614 |
T |
|
| Q |
369 |
gcattgtacatgattttaacaag |
391 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16790615 |
gcattgtacatgattttaacaag |
16790637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 16616796 - 16616688
Alignment:
| Q |
34 |
attttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagttatccatcttcctctctt |
132 |
Q |
| |
|
||||||||||| || |||| ||||||||| || |||||| | |||||||||||| || || ||||| |||||| || ||||||||| |||||||||||| |
|
|
| T |
16616796 |
attttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgcggttgtttattcctgaaagttatccgtcttcctctctt |
16616697 |
T |
|
| Q |
133 |
cttattctg |
141 |
Q |
| |
|
|||||||| |
|
|
| T |
16616696 |
gttattctg |
16616688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 16790271 - 16790386
Alignment:
| Q |
26 |
cattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagttatccatctt |
124 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||| || ||| |||| |||||||||||| | ||| |||||||||||| || ||||||| |||| |
|
|
| T |
16790271 |
cattgaatattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaaccgttgcggttgcttattcctgcaagttatatctctt |
16790370 |
T |
|
| Q |
125 |
cctctcttcttattct |
140 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
16790371 |
catctcttgttattct |
16790386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 137 - 387
Target Start/End: Original strand, 38877186 - 38877436
Alignment:
| Q |
137 |
ttctgtaacgtgactttcgatggcaattcatttagaataacaagagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgact |
236 |
Q |
| |
|
|||| |||| |||||| | | |||||||| | ||||||||||||||| ||||| |||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38877186 |
ttctctaacctgacttccaacggcaattcgtctagaataacaagagaggaagacggataacttggaggaataagcaaccacaacggtttgatcaatgact |
38877285 |
T |
|
| Q |
237 |
gcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtga |
336 |
Q |
| |
|
| ||||| ||||||||||| | ||||||| |||||||||||||| |||| ||||||| |||| |||||||||||||||| |||||||||||||| || | |
|
|
| T |
38877286 |
gaagaacaaatatacatagcctatgagataaaaatcaaaataattaatgtgaatagttcaaaacagaatataaaaccattcacctttttatcatatgtca |
38877385 |
T |
|
| Q |
337 |
agtgagatacaagattctgattgatagtcactgcattgtacatgattttaa |
387 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38877386 |
agtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 38877342 - 38877219
Alignment:
| Q |
18 |
actattcacattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagtta |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||| | ||||||| || ||| | || |||||||||||| | |||||||||||||||| | |||||| |
|
|
| T |
38877342 |
actattcacattaattattttgatttttatctcataggctatgtatatttgttcttcagtcattgatcaaaccgttgtggttgcttattcctccaagtta |
38877243 |
T |
|
| Q |
117 |
tccatcttcctctcttcttattct |
140 |
Q |
| |
|
||| |||||||||||| ||||||| |
|
|
| T |
38877242 |
tccgtcttcctctcttgttattct |
38877219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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