View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_9 (Length: 394)
Name: NF14778_low_9
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 23915996 - 23915603
Alignment:
| Q |
1 |
actaccaggagatcaaaacagggactcaactctcacgattagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggagaaatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915996 |
actaccaggagatcaaaacagggactcaactctcacgattagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggagaaatcaag |
23915897 |
T |
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| Q |
101 |
cataaacaacaatccattcttaataattatgaaatagcacccatctacatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915896 |
cataaacaacaatccattcttaataattatgaaatagcacccatctacatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaa |
23915797 |
T |
|
| Q |
201 |
tgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915796 |
tgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaaggaaacatagaaacagaaacaaactcaattgatcagttgtttgtt |
23915697 |
T |
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| Q |
301 |
ttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaataggagaagaagaagaacagaaacaaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23915696 |
ttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaatcggagaagaagaagaacagaaacaaa |
23915603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 18989526 - 18989919
Alignment:
| Q |
1 |
actaccaggagatcaaaacagggactcaactctcacgattagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggagaaatcaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18989526 |
actaccaggagatcaaaacagggactcaactctcacgattagaatttagagaccaaactaatacaattgtgatatataaggaacagaaggagaaatcaag |
18989625 |
T |
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| Q |
101 |
cataaacaacaatccattcttaataattatgaaatagcacccatctacatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989626 |
cataaacaacaatccattcttaataattatgaaatagcacccatctacatcaccaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaa |
18989725 |
T |
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| Q |
201 |
tgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989726 |
tgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgtt |
18989825 |
T |
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| Q |
301 |
ttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaataggagaagaagaagaacagaaacaaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
18989826 |
ttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaatcggagaagaagaagaacagacacaaa |
18989919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 180 - 394
Target Start/End: Complemental strand, 30338768 - 30338554
Alignment:
| Q |
180 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaac |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
30338768 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaaaattcaatacaacaacccaataggagaagaaaacaaagaaacagagacaaac |
30338669 |
T |
|
| Q |
280 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaataggagaagaag |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30338668 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagctggggtaattgatagcaatcagagaagaag |
30338569 |
T |
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| Q |
380 |
aagaacagaaacaaa |
394 |
Q |
| |
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||||||| ||||||| |
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| T |
30338568 |
aagaacataaacaaa |
30338554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30340193 - 30340059
Alignment:
| Q |
1 |
actaccaggagatcaaaacagggactcaactctcacgattagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggagaaatcaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
30340193 |
actaccaggagatcaaaacagggactcaactctcacaattagaatttagagaccaaactaatacaattgtgatctataaggaacaaaaggagcaatcaag |
30340094 |
T |
|
| Q |
101 |
cataaacaacaatccattcttaataattatgaaat |
135 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
30340093 |
cataaacaacaatccattcttaataattttgaaat |
30340059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 26164577 - 26164676
Alignment:
| Q |
180 |
gcaacctcagttgatcaaaaatgaaatcaagaaaa-ttcaaccctctaacattcaatacaacaacccaataggagaagaa-aacatagaaacagaaacaa |
277 |
Q |
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|||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26164577 |
gcaaccacaattgatcaaaaatgaaatcaagaaaaattcaaccctctaaccttcaatacaacaacccaatgggagaagaagaacaaagaaacagaaacaa |
26164676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 30339219 - 30339163
Alignment:
| Q |
129 |
atgaaatagcacccatctacatcatcaattgttgagacatcaaatgagaaagcaacc |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339219 |
atgaaatagcacccatctacatcatcaattgttgagacatcaaatgagaaagcaacc |
30339163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 26164050 - 26164091
Alignment:
| Q |
144 |
tctacatcatcaattgttgagacatcaaatgagaaagcaacc |
185 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26164050 |
tctacatcatcaattgttgagacatcaaatgagaaagcaacc |
26164091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 54434877 - 54435010
Alignment:
| Q |
3 |
taccaggagatcaaaacagggactcaactctcacga----ttagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggagaaatc- |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54434877 |
taccaggagatcaaaatagggactcaactctcataaataattagaatttagagaccaaactaatacaattgtgatatataaggaacaaaaggtacaatca |
54434976 |
T |
|
| Q |
98 |
aagcataaacaacaatccattcttaataattatg |
131 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||| |
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|
| T |
54434977 |
aaacataaacaaaaatccattcttaataattatg |
54435010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 17732635 - 17732599
Alignment:
| Q |
144 |
tctacatcatcaattgttgagacatcaaatgagaaag |
180 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| |
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|
| T |
17732635 |
tctatatcatgaattgttgagacatcaaatgagaaag |
17732599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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