View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14779_low_1 (Length: 257)
Name: NF14779_low_1
Description: NF14779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14779_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 51721442 - 51721263
Alignment:
| Q |
75 |
ggtcaatgaaagaga--gaggatcatcatgtaaagtaagtaacagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatcca |
172 |
Q |
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| T |
51721442 |
ggtcaatgagagagaaagaggatcatcatgtaaaataagtaatagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatcca |
51721343 |
T |
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| Q |
173 |
gtcaaattggtctttgcttttcatgcattggcccactttgcattttctcattttagatactacggaacctagaaattcat |
252 |
Q |
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| T |
51721342 |
gtcaaattggtctttgcttttcatgcattggcccactttgcattttctcattttagatactaccgaatctagaaattcat |
51721263 |
T |
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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 85 - 252
Target Start/End: Original strand, 26617259 - 26617417
Alignment:
| Q |
85 |
agagagaggatcatcatgtaaagtaagtaacagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatccagtcaaattggtc |
184 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26617259 |
agagagagggtcatcatgtaaagtaa----cagtgaatgcatgtggtttctgtatgcatggt-----ggttaattctttaaagatccagtcaaattggtc |
26617349 |
T |
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| Q |
185 |
tttgcttttcatgcattggcccactttgcattttctcattttagatactacggaacctagaaattcat |
252 |
Q |
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| T |
26617350 |
tttgcttttcatgcattggcccactttgcattttctcattttagatactacttaacctacaaattcat |
26617417 |
T |
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