View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14779_low_2 (Length: 228)

Name: NF14779_low_2
Description: NF14779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14779_low_2
NF14779_low_2
[»] chr4 (4 HSPs)
chr4 (10-210)||(1600959-1601159)
chr4 (96-161)||(547520-547585)
chr4 (47-80)||(21833765-21833798)
chr4 (51-191)||(55908113-55908253)
[»] chr5 (2 HSPs)
chr5 (57-178)||(38266943-38267064)
chr5 (46-81)||(28532398-28532433)
[»] chr8 (2 HSPs)
chr8 (96-156)||(5767091-5767151)
chr8 (98-156)||(14003653-14003711)
[»] chr6 (1 HSPs)
chr6 (36-147)||(6588699-6588810)
[»] chr7 (1 HSPs)
chr7 (36-82)||(10615273-10615319)
[»] chr1 (2 HSPs)
chr1 (36-80)||(19467875-19467919)
chr1 (59-147)||(52093395-52093483)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 1601159 - 1600959
Alignment:
Q  10 aagaatatggaattttgattactaatcatttcattcactcattggtgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601159 aagaatatggaattttgattactaatcatttcattcactcattggtgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatca 1601060  T
Q  110 gttgctctcctctattgcaaaggaaaatcttcctttgaggaggcttgacctcgcatatttcactggctatagttatattggagtagttagtttgttatcc 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601059 gttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttgacctcgcatatttcactggctatagttatattggagtagttagtttgttatcc 1600960  T
Q  210 a 210  Q
    |    
T  1600959 a 1600959  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 547585 - 547520
Alignment:
Q  96 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttgaggaggcttgacctc 161  Q
    ||||||||||||  |||||||||||||||||||| ||||  | |||||||||| | ||||| ||||    
T  547585 cgtatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctc 547520  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 21833765 - 21833798
Alignment:
Q  47 ctcattggtgagtttgaagggtttgacttgtctt 80  Q
    |||||| |||||||||||||||||||||||||||    
T  21833765 ctcattagtgagtttgaagggtttgacttgtctt 21833798  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 55908113 - 55908253
Alignment:
Q  51 ttggtgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttgagga 150  Q
    |||||||||||||| || || ||||||||| | ||||| | || ||| ||||||||| | ||||| |  |||||||||| || |  |||||||||||| |    
T  55908113 ttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttcctttgagaa 55908212  T
Q  151 ggcttgacctcgcatatttcactggctatagttatattgga 191  Q
    | |||| ||||  | ||| ||| ||||||| |||| |||||    
T  55908213 gacttgtcctccaaaattgcaccggctataattatgttgga 55908253  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 38266943 - 38267064
Alignment:
Q  57 agtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttgaggaggcttg 156  Q
    ||||| |||| ||||||||||||||| |||||||  ||||  ||||| ||||| || || ||||||||||||| | ||| ||||||||||| ||| ||||    
T  38266943 agtttaaaggctttgacttgtcttgatttgtcctgctggcacatctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttg 38267042  T
Q  157 acctcgcatatttcactggcta 178  Q
     ||||| ||||| ||| |||||    
T  38267043 gcctcggatattgcaccggcta 38267064  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 28532433 - 28532398
Alignment:
Q  46 actcattggtgagtttgaagggtttgacttgtcttg 81  Q
    |||||||||||||||| |||||||||||||||||||    
T  28532433 actcattggtgagtttcaagggtttgacttgtcttg 28532398  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 5767091 - 5767151
Alignment:
Q  96 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttgaggaggcttg 156  Q
    |||||||| ||||| || |||||||| ||||||| ||||| ||||||||||||||||||||    
T  5767091 cgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttg 5767151  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 14003711 - 14003653
Alignment:
Q  98 tatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttgaggaggcttg 156  Q
    |||||| ||||| || |||||||| ||||||| ||||| ||||||||||||||||||||    
T  14003711 tatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 14003653  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 6588699 - 6588810
Alignment:
Q  36 catttcattcactcattggtgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaa 135  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||  |||||   || |  |||||| ||| ||||||||| | ||||||||| | ||     
T  6588699 catttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaac 6588798  T
Q  136 atcttcctttga 147  Q
     |||||||||||    
T  6588799 gtcttcctttga 6588810  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 10615319 - 10615273
Alignment:
Q  36 catttcattcactcattggtgagtttgaagggtttgacttgtcttga 82  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  10615319 cattttattgactcattggtgagtttgaagggcttgacttgtcttga 10615273  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 19467875 - 19467919
Alignment:
Q  36 catttcattcactcattggtgagtttgaagggtttgacttgtctt 80  Q
    ||||| ||| |||||||| ||||||||||||||||||||| ||||    
T  19467875 cattttattgactcattgctgagtttgaagggtttgacttctctt 19467919  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 52093483 - 52093395
Alignment:
Q  59 tttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcttcctttga 147  Q
    |||||| ||||||||||||||||| ||||| | |  |||||| || ||||| |||||||| ||| ||||| || ||  |||||||||||    
T  52093483 tttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctctcatctcttgcagagcaaggtcttcctttga 52093395  T

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