View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1477_high_15 (Length: 258)

Name: NF1477_high_15
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1477_high_15
NF1477_high_15
[»] chr8 (23 HSPs)
chr8 (2-248)||(20529367-20529613)
chr8 (3-248)||(41247141-41247386)
chr8 (3-196)||(25122976-25123169)
chr8 (3-178)||(37612222-37612397)
chr8 (2-193)||(19992574-19992766)
chr8 (31-248)||(20561171-20561391)
chr8 (31-248)||(20572733-20572953)
chr8 (27-248)||(20653571-20653793)
chr8 (3-106)||(6999838-6999942)
chr8 (11-179)||(22221877-22222045)
chr8 (11-179)||(22228219-22228387)
chr8 (3-87)||(39115912-39115996)
chr8 (2-65)||(16404547-16404610)
chr8 (2-87)||(16193399-16193483)
chr8 (72-190)||(22981813-22981933)
chr8 (18-133)||(21681606-21681722)
chr8 (3-87)||(24385297-24385380)
chr8 (3-87)||(29760588-29760671)
chr8 (25-87)||(275079-275140)
chr8 (25-87)||(640709-640770)
chr8 (25-87)||(826515-826576)
chr8 (207-248)||(20482088-20482128)
chr8 (3-87)||(43373036-43373119)
[»] chr6 (26 HSPs)
chr6 (2-248)||(31628675-31628920)
chr6 (2-181)||(18777682-18777861)
chr6 (27-248)||(18399425-18399648)
chr6 (3-248)||(16107002-16107246)
chr6 (24-248)||(16086503-16086726)
chr6 (2-181)||(25744004-25744183)
chr6 (15-181)||(25633263-25633430)
chr6 (3-257)||(18433119-18433361)
chr6 (2-188)||(18570826-18571014)
chr6 (2-177)||(22441488-22441664)
chr6 (56-175)||(32899349-32899469)
chr6 (3-65)||(14128226-14128288)
chr6 (2-87)||(35008988-35009073)
chr6 (3-74)||(13014238-13014309)
chr6 (72-134)||(25366829-25366891)
chr6 (2-87)||(13620351-13620435)
chr6 (2-87)||(18583954-18584039)
chr6 (207-248)||(18777616-18777657)
chr6 (2-87)||(19982826-19982910)
chr6 (2-66)||(23148634-23148697)
chr6 (218-248)||(18570767-18570797)
chr6 (92-184)||(18583867-18583960)
chr6 (2-83)||(29666481-29666561)
chr6 (2-87)||(35014690-35014774)
chr6 (77-133)||(21410637-21410693)
chr6 (212-248)||(32899277-32899313)
[»] chr4 (23 HSPs)
chr4 (3-196)||(20813064-20813258)
chr4 (16-181)||(23269463-23269629)
chr4 (31-179)||(44056469-44056619)
chr4 (2-181)||(44347375-44347555)
chr4 (4-193)||(34395799-34395989)
chr4 (2-181)||(53907226-53907404)
chr4 (28-242)||(21959004-21959219)
chr4 (3-248)||(30458392-30458624)
chr4 (2-248)||(16732658-16732904)
chr4 (2-148)||(5682050-5682197)
chr4 (11-193)||(8871997-8872180)
chr4 (2-101)||(53704268-53704367)
chr4 (2-87)||(54117802-54117887)
chr4 (83-248)||(30232090-30232255)
chr4 (92-242)||(819535-819685)
chr4 (25-106)||(55376145-55376225)
chr4 (108-191)||(18493947-18494031)
chr4 (138-239)||(12836853-12836953)
chr4 (92-196)||(45458460-45458565)
chr4 (3-87)||(25118719-25118802)
chr4 (78-133)||(37956599-37956654)
chr4 (2-84)||(122511-122592)
chr4 (2-65)||(819455-819519)
[»] chr1 (21 HSPs)
chr1 (2-194)||(22402624-22402817)
chr1 (2-169)||(35055313-35055480)
chr1 (2-177)||(41212575-41212751)
chr1 (28-248)||(21718714-21718936)
chr1 (2-193)||(35521859-35522057)
chr1 (2-187)||(27329278-27329465)
chr1 (2-97)||(44320257-44320352)
chr1 (2-84)||(20887362-20887444)
chr1 (2-87)||(13103769-13103854)
chr1 (77-193)||(20346562-20346679)
chr1 (17-66)||(41219060-41219109)
chr1 (92-239)||(49968145-49968292)
chr1 (2-54)||(20346674-20346726)
chr1 (2-87)||(20931955-20932039)
chr1 (2-87)||(21860647-21860731)
chr1 (19-133)||(16646515-16646630)
chr1 (25-87)||(20446296-20446357)
chr1 (25-87)||(20532060-20532121)
chr1 (210-248)||(27329487-27329525)
chr1 (92-184)||(41218962-41219055)
chr1 (2-87)||(44034505-44034589)
[»] chr3 (48 HSPs)
chr3 (3-194)||(54424550-54424742)
chr3 (15-196)||(6146300-6146480)
chr3 (2-181)||(13818062-13818242)
chr3 (28-185)||(35124245-35124404)
chr3 (2-194)||(16181464-16181657)
chr3 (2-193)||(17101875-17102066)
chr3 (2-181)||(19570206-19570386)
chr3 (15-196)||(6153862-6154042)
chr3 (4-193)||(38528265-38528455)
chr3 (2-186)||(317025-317210)
chr3 (28-183)||(53898133-53898290)
chr3 (27-196)||(14304581-14304753)
chr3 (92-248)||(50111655-50111811)
chr3 (15-191)||(14295980-14296158)
chr3 (15-191)||(14301607-14301785)
chr3 (17-181)||(34438882-34439036)
chr3 (2-87)||(15856797-15856882)
chr3 (42-194)||(30207757-30207909)
chr3 (19-128)||(11060537-11060647)
chr3 (77-186)||(16995652-16995762)
chr3 (4-64)||(13836278-13836338)
chr3 (1-62)||(12348825-12348886)
chr3 (56-127)||(40939735-40939806)
chr3 (2-87)||(3993187-3993271)
chr3 (134-194)||(13836158-13836219)
chr3 (123-184)||(17912142-17912203)
chr3 (1-54)||(22143850-22143903)
chr3 (92-184)||(13839422-13839515)
chr3 (2-87)||(17912033-17912117)
chr3 (2-87)||(19260384-19260468)
chr3 (77-133)||(55192629-55192685)
chr3 (77-128)||(3578693-3578744)
chr3 (134-193)||(12348918-12348977)
chr3 (11-54)||(16995614-16995657)
chr3 (25-87)||(2844827-2844888)
chr3 (218-248)||(12349001-12349031)
chr3 (24-105)||(14527614-14527696)
chr3 (218-248)||(17522620-17522650)
chr3 (25-87)||(28558809-28558870)
chr3 (218-248)||(55440589-55440619)
chr3 (92-184)||(7854532-7854625)
chr3 (2-87)||(12029727-12029811)
chr3 (144-193)||(17101190-17101239)
chr3 (2-87)||(33342514-33342598)
chr3 (2-87)||(45582250-45582334)
chr3 (2-87)||(51960664-51960749)
chr3 (3-87)||(19232406-19232489)
chr3 (19-87)||(38168553-38168620)
[»] scaffold0359 (2 HSPs)
scaffold0359 (3-239)||(11173-11407)
scaffold0359 (15-248)||(1801-2023)
[»] scaffold0008 (2 HSPs)
scaffold0008 (3-248)||(23177-23421)
scaffold0008 (3-81)||(35564-35642)
[»] scaffold0120 (7 HSPs)
scaffold0120 (3-176)||(31767-31940)
scaffold0120 (3-176)||(47066-47239)
scaffold0120 (13-183)||(22061-22220)
scaffold0120 (207-245)||(31699-31737)
scaffold0120 (207-245)||(47269-47307)
scaffold0120 (207-248)||(21997-22038)
scaffold0120 (2-84)||(27535-27618)
[»] chr7 (30 HSPs)
chr7 (16-183)||(12369369-12369536)
chr7 (27-163)||(12759551-12759688)
chr7 (3-187)||(47290328-47290512)
chr7 (3-194)||(44865767-44865948)
chr7 (15-248)||(3895509-3895732)
chr7 (2-248)||(11287903-11288151)
chr7 (15-128)||(16569532-16569646)
chr7 (15-128)||(16596016-16596130)
chr7 (15-133)||(12247646-12247764)
chr7 (3-87)||(110803-110887)
chr7 (92-242)||(45451772-45451922)
chr7 (2-181)||(35095366-35095539)
chr7 (15-177)||(144191-144343)
chr7 (2-184)||(7283590-7283761)
chr7 (15-87)||(13862479-13862551)
chr7 (3-87)||(26069135-26069218)
chr7 (3-87)||(26069793-26069876)
chr7 (3-87)||(26093580-26093663)
chr7 (2-87)||(2029554-2029639)
chr7 (89-181)||(39046233-39046325)
chr7 (122-184)||(14419847-14419910)
chr7 (1-87)||(25124765-25124850)
chr7 (2-87)||(127052-127136)
chr7 (2-87)||(1936554-1936638)
chr7 (207-248)||(12369559-12369600)
chr7 (2-83)||(16212390-16212470)
chr7 (210-248)||(16569729-16569767)
chr7 (218-248)||(16595895-16595925)
chr7 (92-184)||(110881-110974)
chr7 (2-87)||(32493579-32493663)
[»] chr5 (19 HSPs)
chr5 (3-248)||(20712561-20712806)
chr5 (2-194)||(11336698-11336892)
chr5 (17-193)||(21397631-21397807)
chr5 (2-86)||(21646268-21646352)
chr5 (28-186)||(21907266-21907426)
chr5 (19-112)||(28262071-28262164)
chr5 (27-196)||(24182674-24182844)
chr5 (2-87)||(27182109-27182194)
chr5 (79-189)||(22662271-22662382)
chr5 (9-87)||(11584686-11584764)
chr5 (2-74)||(23981044-23981116)
chr5 (2-65)||(4865900-4865963)
chr5 (1-54)||(1167748-1167801)
chr5 (77-187)||(1167796-1167907)
chr5 (151-242)||(21907190-21907280)
chr5 (19-128)||(23467041-23467151)
chr5 (2-87)||(21205552-21205637)
chr5 (92-188)||(11211699-11211794)
chr5 (2-87)||(21651327-21651411)
[»] scaffold0396 (1 HSPs)
scaffold0396 (19-196)||(11240-11418)
[»] scaffold0031 (1 HSPs)
scaffold0031 (27-180)||(71167-71322)
[»] scaffold0035 (2 HSPs)
scaffold0035 (2-183)||(108979-109160)
scaffold0035 (2-183)||(117480-117661)
[»] scaffold0021 (4 HSPs)
scaffold0021 (2-179)||(131766-131944)
scaffold0021 (77-133)||(12655-12711)
scaffold0021 (77-133)||(16502-16558)
scaffold0021 (77-133)||(26033-26089)
[»] scaffold0673 (2 HSPs)
scaffold0673 (15-195)||(6376-6557)
scaffold0673 (15-181)||(364-520)
[»] scaffold0037 (1 HSPs)
scaffold0037 (2-242)||(24241-24481)
[»] chr2 (23 HSPs)
chr2 (3-248)||(17367305-17367550)
chr2 (2-183)||(23836226-23836408)
chr2 (3-248)||(36890200-36890445)
chr2 (2-192)||(42535149-42535339)
chr2 (27-248)||(27262291-27262513)
chr2 (15-181)||(25875464-25875620)
chr2 (2-128)||(25602634-25602762)
chr2 (27-196)||(4447674-4447843)
chr2 (2-87)||(19794263-19794348)
chr2 (25-160)||(32466423-32466559)
chr2 (17-193)||(28974588-28974767)
chr2 (2-87)||(9652435-9652519)
chr2 (81-183)||(271717-271820)
chr2 (77-191)||(24570882-24570997)
chr2 (25-87)||(15633846-15633908)
chr2 (77-133)||(22579451-22579507)
chr2 (2-89)||(22863542-22863628)
chr2 (25-87)||(463337-463398)
chr2 (25-87)||(20626907-20626968)
chr2 (19-128)||(23821335-23821445)
chr2 (19-128)||(23830414-23830524)
chr2 (218-248)||(25602512-25602542)
chr2 (2-87)||(8891825-8891909)
[»] scaffold0016 (2 HSPs)
scaffold0016 (2-181)||(164765-164942)
scaffold0016 (3-87)||(165799-165882)
[»] scaffold0034 (2 HSPs)
scaffold0034 (2-248)||(41145-41393)
scaffold0034 (2-248)||(46652-46900)
[»] scaffold0001 (4 HSPs)
scaffold0001 (18-196)||(61343-61523)
scaffold0001 (31-179)||(79432-79582)
scaffold0001 (31-175)||(70167-70313)
scaffold0001 (212-248)||(70349-70385)
[»] scaffold1867 (1 HSPs)
scaffold1867 (2-181)||(695-874)
[»] scaffold0740 (1 HSPs)
scaffold0740 (16-194)||(4820-4999)
[»] scaffold0117 (1 HSPs)
scaffold0117 (18-240)||(11099-11321)
[»] scaffold0083 (1 HSPs)
scaffold0083 (24-193)||(15400-15570)
[»] scaffold0190 (1 HSPs)
scaffold0190 (15-196)||(10474-10657)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-193)||(38841-39034)
[»] scaffold0816 (1 HSPs)
scaffold0816 (2-181)||(2581-2761)
[»] scaffold0447 (2 HSPs)
scaffold0447 (9-248)||(5046-5282)
scaffold0447 (9-248)||(9660-9896)
[»] scaffold0383 (1 HSPs)
scaffold0383 (9-248)||(7655-7891)
[»] scaffold0338 (1 HSPs)
scaffold0338 (2-248)||(9473-9720)
[»] scaffold0077 (2 HSPs)
scaffold0077 (3-87)||(14999-15083)
scaffold0077 (3-87)||(36480-36563)
[»] scaffold0022 (3 HSPs)
scaffold0022 (2-133)||(112059-112191)
scaffold0022 (77-133)||(102534-102590)
scaffold0022 (210-248)||(112269-112307)
[»] scaffold0014 (2 HSPs)
scaffold0014 (48-193)||(85872-86019)
scaffold0014 (19-191)||(159843-160016)
[»] scaffold0183 (1 HSPs)
scaffold0183 (3-239)||(5207-5431)
[»] scaffold0218 (1 HSPs)
scaffold0218 (2-87)||(4718-4803)
[»] scaffold0011 (3 HSPs)
scaffold0011 (2-101)||(254394-254493)
scaffold0011 (2-101)||(261000-261099)
scaffold0011 (2-87)||(122725-122810)
[»] scaffold0122 (1 HSPs)
scaffold0122 (2-87)||(19483-19568)
[»] scaffold0480 (1 HSPs)
scaffold0480 (2-193)||(4774-4957)
[»] scaffold0116 (1 HSPs)
scaffold0116 (9-184)||(30644-30809)
[»] scaffold0310 (2 HSPs)
scaffold0310 (2-87)||(5935-6020)
scaffold0310 (117-184)||(6039-6105)
[»] scaffold0260 (2 HSPs)
scaffold0260 (77-193)||(8885-9002)
scaffold0260 (2-54)||(8997-9049)
[»] scaffold0068 (4 HSPs)
scaffold0068 (2-90)||(48767-48855)
scaffold0068 (2-90)||(62215-62303)
scaffold0068 (138-193)||(48681-48736)
scaffold0068 (138-193)||(62129-62184)
[»] scaffold0342 (1 HSPs)
scaffold0342 (19-133)||(12870-12985)
[»] scaffold0162 (2 HSPs)
scaffold0162 (10-87)||(25985-26062)
scaffold0162 (3-87)||(7729-7812)
[»] scaffold0084 (1 HSPs)
scaffold0084 (9-54)||(55684-55729)
[»] scaffold0049 (1 HSPs)
scaffold0049 (2-87)||(20806-20891)
[»] scaffold0240 (1 HSPs)
scaffold0240 (134-257)||(8048-8169)
[»] scaffold0138 (1 HSPs)
scaffold0138 (19-133)||(21957-22072)
[»] scaffold1539 (2 HSPs)
scaffold1539 (2-87)||(176-264)
scaffold1539 (119-184)||(89-155)
[»] scaffold1164 (1 HSPs)
scaffold1164 (29-87)||(2013-2071)
[»] scaffold0175 (2 HSPs)
scaffold0175 (2-87)||(5341-5425)
scaffold0175 (3-87)||(15507-15590)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-87)||(193032-193116)
[»] scaffold0498 (1 HSPs)
scaffold0498 (3-87)||(9496-9579)
[»] scaffold0184 (1 HSPs)
scaffold0184 (2-86)||(30813-30896)
[»] scaffold0078 (2 HSPs)
scaffold0078 (2-86)||(41948-42031)
scaffold0078 (122-184)||(36743-36806)
[»] scaffold1295 (1 HSPs)
scaffold1295 (19-133)||(707-822)
[»] scaffold0537 (1 HSPs)
scaffold0537 (2-53)||(576-627)
[»] scaffold0327 (1 HSPs)
scaffold0327 (19-133)||(6272-6387)
[»] scaffold0012 (1 HSPs)
scaffold0012 (2-89)||(247004-247090)
[»] scaffold0876 (1 HSPs)
scaffold0876 (134-184)||(324-374)
[»] scaffold0554 (1 HSPs)
scaffold0554 (218-248)||(2401-2431)
[»] scaffold0417 (1 HSPs)
scaffold0417 (25-87)||(15575-15636)
[»] scaffold0335 (1 HSPs)
scaffold0335 (25-87)||(6633-6694)
[»] scaffold0106 (1 HSPs)
scaffold0106 (25-87)||(49090-49151)
[»] scaffold0103 (1 HSPs)
scaffold0103 (218-248)||(34150-34180)
[»] scaffold0465 (1 HSPs)
scaffold0465 (2-87)||(9573-9657)
[»] scaffold0132 (2 HSPs)
scaffold0132 (2-87)||(14131-14215)
scaffold0132 (2-87)||(42987-43071)
[»] scaffold0389 (1 HSPs)
scaffold0389 (77-133)||(11263-11319)
[»] scaffold0266 (1 HSPs)
scaffold0266 (3-87)||(3145-3228)
[»] scaffold0028 (1 HSPs)
scaffold0028 (3-87)||(107350-107433)
[»] scaffold0018 (1 HSPs)
scaffold0018 (2-66)||(50748-50811)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 20529367 - 20529613
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  20529367 attagtaagaatagttgttttactaagttactagagtaaaattaagattttactgtttagtgaccgttggtgatgttttaccgttaattgaccgttatta 20529466  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  20529467 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaatagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgataaaaa 20529566  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
       | ||||| ||||||||||||||||||||||||||||||||||||    
T  20529567 aaacctactcgtataagaaatttcctcacactttcatttcataagat 20529613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 41247386 - 41247141
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| ||| ||||  ||||||||||  ||||||||||||||    
T  41247386 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttaccgcttagagaccgttagtgacattttaccgttttttgaccgttattag 41247287  T
Q  103 tgaaataccgttgtgggtgtagaaacctttt--gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnn 200  Q
    |||| |||||||  | |||||||||| ||||  |||||||| |||||| |||||||||||||  || |||||||||||||||| ||| |||||||         
T  41247286 tgaattaccgtt-agagtgtagaaacattttgagatgtgaatagaaatgggttaagtccattgagtggagggttaggcccattgaggagacttga-cata 41247189  T
Q  201 nnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
        | ||| ||||| ||||||||||||||||||||| |||| |||||    
T  41247188 aaaacatacacttatgagaaatttcctcacactttcacttcacaagat 41247141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 25123169 - 25122976
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||| || |  ||||||||||| |||||||||||||     
T  25123169 ttagtgagaatagttgttttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtaacattttaccgttatttgaccgttattaa 25123070  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    |||| || ||||  | |||||||||| |||  |||||||| |||||| |||||||||||||| || ||||||||| |||||||||| ||||||||    
T  25123069 tgaattatcgtt-agagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttagacccattaaggagacttgat 25122976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 37612397 - 37612222
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||| || ||| ||||| ||||| |||| |||||||||||||||    
T  37612397 ttagtgagaatagttgttttactaagttactagagtaaaatgaagattttaccgtttagtaaccgttggtgatattttatcgtt-attgaccgttattag 37612299  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggc 178  Q
    |||| ||||| |  | |||||||||| |||  |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  37612298 tgaattaccggttagagtgtagaaacatttgagatgtgaatagaaattggttaaatccattaagttgagggttaggc 37612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 19992574 - 19992766
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||  ||||||| |||  ||||||||||||    
T  19992574 attagtgagaaccgttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgacattttaccattacatgaccgttatta 19992673  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    ||||| ||||| |  | ||||||||||  ||||| | |||| |||||| |||||||| ||||| || |||||||||||||| |||||||||||    
T  19992674 gtgaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtacattaagtggagggttaggcccaataaggggactt 19992766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 20561171 - 20561391
Alignment:
Q  31 actagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacc 129  Q
    |||||||||| |||| | ||||||| |||||||||| ||| ||||||||||||||||  ||||||| |||||||||| |||||||||| | ||||||||     
T  20561171 actagagtaataattgatattttaccgtttagtgaccgttggtgatgttttaccgttgtttgaccgatattagtgaattaccgttgtgtgggtagaaaca 20561270  T
Q  130 tt--ttgatgtgaaaagaaattggttaagtccattagg-ttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttcc 226  Q
    ||  || |  |||| |||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||        | || |||| | ||||||||||    
T  20561271 tttgttaaattgaatagaaatgggttaaatccattaggtttgagagttaggcccattaaggggacttgatataaaaacc-tagtcttgtgagaaatttcc 20561369  T
Q  227 tcacactttcatttcataagat 248  Q
    ||||||||||||||||||||||    
T  20561370 tcacactttcatttcataagat 20561391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 20572733 - 20572953
Alignment:
Q  31 actagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacc 129  Q
    |||||||||| |||| | ||||||| |||||||||| ||| ||||||||||||||||  ||||||| |||||||||| |||||||||| | ||||||||     
T  20572733 actagagtaataattgatattttaccgtttagtgaccgttggtgatgttttaccgttgtttgaccgatattagtgaattaccgttgtgtgggtagaaaca 20572832  T
Q  130 tt--ttgatgtgaaaagaaattggttaagtccattagg-ttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttcc 226  Q
    ||  || |  |||| |||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||        | || |||| | ||||||||||    
T  20572833 tttgttaaattgaatagaaatgggttaaatccattaggtttgagagttaggcccattaaggggacttgatataaaaacc-tagtcttgtgagaaatttcc 20572931  T
Q  227 tcacactttcatttcataagat 248  Q
    ||||||||||||||||||||||    
T  20572932 tcacactttcatttcataagat 20572953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 20653571 - 20653793
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||| ||||| ||||| |||||||| ||||||||||||||| |  ||||||| |||||||    
T  20653571 agttactagagtaataattagtattttaccgtttagtgactgttggtgatattttatcgttaattaaccgttattagtgaattgtcgttgtgtgtgtaga 20653670  T
Q  126 aacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaattt 224  Q
    ||| |||| |||||||   ||||| |||||||||||||| ||||||||||||||||||| | ||||| | |         | || |||||| ||||||||    
T  20653671 aacattttagatgtgagttgaaatgggttaagtccattaagttgagggttaggcccatttatgggacat-actataaaagcctagtcttatgagaaattt 20653769  T
Q  225 cctcacactttcatttcataagat 248  Q
    || |||||||||||||||||||||    
T  20653770 ccacacactttcatttcataagat 20653793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 6999838 - 6999942
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaa-ttaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    ||||| |||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  |||||||||||||||||||||||||    
T  6999838 ttagtgagaatagttgtttcactaagttactagagtaaaaattaagattttaccgtttagtgaccgttagtgacattttaccgttaattgaccgttatta 6999937  T
Q  102 gtgaa 106  Q
    |||||    
T  6999938 gtgaa 6999942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 22221877 - 22222045
Alignment:
Q  11 aatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaatac 110  Q
    ||||||| |||| ||||||| ||||| ||||| ||||||||||| |||||||||| ||  ||||  ||||||||||| || |||||||||||| || |||    
T  22221877 aatagttattttactaagttgctagaataaaactaagattttaccgtttagtgaccgtgagtgacattttaccgttactt-accgttattagttaattac 22221975  T
Q  111 cgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    || |  | |||||||||| |||  |||||||| |||||| |||||||||||||| || ||||||||||||    
T  22221976 cggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttaggcc 22222045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 22228219 - 22228387
Alignment:
Q  11 aatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaatac 110  Q
    ||||||| |||| ||||||| ||||| ||||| ||||||||||| |||||||||| ||  ||||  ||||||||||| || |||||||||||| || |||    
T  22228219 aatagttattttactaagttgctagaataaaactaagattttaccgtttagtgaccgtgagtgacattttaccgttactt-accgttattagttaattac 22228317  T
Q  111 cgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    || |  | |||||||||| |||  |||||||| |||||| |||||||||||||| || ||||||||||||    
T  22228318 cggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttaggcc 22228387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 39115996 - 39115912
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||  |||||| ||||    
T  39115996 ttagtaagaatagttattttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgacattttactgtta 39115912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 16404547 - 16404610
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgac 65  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  16404547 attagtgagaatagttattttactaagttactagagtaaaattgagattttaccgtttagtgac 16404610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 16193399 - 16193483
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||| |||||||||||    
T  16193399 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgatattttaccgtta 16193483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 22981933 - 22981813
Alignment:
Q  72 tgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccatt-aggttga 169  Q
    |||| |||||||| ||| |||||||||||||| || |||||||| | |||||||||| |||| ||| |||   | | | ||||||||||||| || || |    
T  22981933 tgatattttaccgataagtgaccgttattagtaaattaccgttgagtgtgtagaaacattttagatttgagttggagtgggttaagtccattaagcttta 22981834  T
Q  170 gggttaggcccattaagggga 190  Q
    |||||||||||||||||||||    
T  22981833 gggttaggcccattaagggga 22981813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 21681722 - 21681606
Alignment:
Q  18 gttttcctaagttactagagta-aaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgt 116  Q
    ||||| |||| ||||||||||| ||||| | ||||||| |||||||  | ||| ||||| |||||  |||| ||||||||||||||||   | |||||||    
T  21681722 gttttactaaattactagagtataaatttatattttaccgtttagtagccgttggtgatattttatagttatttgaccgttattagtggtttgccgttgt 21681623  T
Q  117 gggtgtagaaacctttt 133  Q
    | |||||||||| ||||    
T  21681622 gtgtgtagaaacatttt 21681606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 24385297 - 24385380
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| ||||||||||  || ||||| |||||||||||    
T  24385297 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccattagtgatattttaccgtta 24385380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 29760671 - 29760588
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  29760671 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 29760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 275140 - 275079
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  275140 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 275079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 640709 - 640770
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  640709 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 640770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 826515 - 826576
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  826515 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 826576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 20482128 - 20482088
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  20482128 tactcttataagaaatttccacacactttca-ttcataagat 20482088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 43373036 - 43373119
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| |||  |||  |||||||||||    
T  43373036 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttattgacattttaccgtta 43373119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 31628920 - 31628675
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  31628920 attagtgagaaccgttgttttactaagttactagaataaaattaagattttaccgtttagtgaccgttggtgacattttaccgttatttgaccgttatta 31628821  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||         
T  31628820 gtgaaataccgttgtacgtgtagaaacattttgatgtgaatagaaatgggttaagtccattaagttgagggttaggcccattaaggggacttgatataaa 31628721  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
         ||||||||| |||||||| |||||||||||||||||||||||    
T  31628720 aat-atactcttatgagaaattttctcacactttcatttcataagat 31628675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 18777861 - 18777682
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||| | || |||||||    
T  18777861 attagtgagaaccgttgttttactaagatactagagtaaaattaagattttaccgtttagtgaccgttggtgacattttaccgttaaataactgttatta 18777762  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  18777761 gtgaaataccgttgtatgtgtagaaacattttgatgtgaatagaaatgggttaagtccattaagttgagggttaggccca 18777682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 18399648 - 18399425
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||||  ||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||    
T  18399648 agttactagagtaataattagtattttaccgtttagtgaccattggtgatattttaccgttaattgaccgttattagtgaaataccgttgtgtgtataga 18399549  T
Q  126 aac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaattt 224  Q
    |||  ||||||| |||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||        | || |||||| ||||||||    
T  18399548 aacatttttgatttgaatagaaatgggttaagtctattaagttgagggttaggcccattaaggggacttgatataaaaacc-tagtcttatgagaaattt 18399450  T
Q  225 cctcacactttca-tttcataagat 248  Q
    ||||||||||||| |||||||||||    
T  18399449 cctcacactttcattttcataagat 18399425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 16107246 - 16107002
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    ||||| ||||| || ||||| ||||||||||||||||||  | || |||||||| |||||||||| ||| ||||| ||||||||||| |||||| |||||    
T  16107246 ttagtgagaatcgtggttttactaagttactagagtaaataactaggattttaccgtttagtgaccgttggtgatattttaccgtta-ttgaccattatt 16107148  T
Q  101 agtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnnn 199  Q
    ||||||||||||||||||| |||||||| ||||||| |||| |||||| ||||||||||||| || ||||| |||||||||||||| ||||||||||       
T  16107147 agtgaaataccgttgtggg-gtagaaacattttgatttgaatagaaatgggttaagtccattaagtttgagagttaggcccattaaagggacttgatata 16107049  T
Q  200 nnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
         | ||||||||| ||||||||||||||||||||| ||||||||||    
T  16107048 aaaacc-tactcttatgagaaatttcctcacactttca-ttcataagat 16107002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 16086726 - 16086503
Alignment:
Q  24 ctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtg 121  Q
    ||||||||||||||||||  | || ||||||||||||||||||| |||  |||| ||||||||||| |||||| |||||||||||||||||||||||| |    
T  16086726 ctaagttactagagtaaataactaggattttactgtttagtgaccgttgatgatattttaccgtta-ttgaccattattagtgaaataccgttgtggg-g 16086629  T
Q  122 tagaaaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaa 220  Q
    ||||||| ||||||| |||| |||||| ||||||||||||| || ||||| |||||||||||||||||||||||||        | ||||||||| ||||    
T  16086628 tagaaacattttgatttgaatagaaatgggttaagtccattaagtttgagagttaggcccattaaggggacttgat-ataaaaacatactcttatgagaa 16086530  T
Q  221 atttcctcacactttcatttcataagat 248  Q
    ||||||||||||||||| ||||||||||    
T  16086529 atttcctcacactttca-ttcataagat 16086503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 25744004 - 25744183
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| |||| |||| |||| | ||||||||||||||||| ||||| |||||||||||||||| ||| ||||  || ||||| ||||| ||||||||||    
T  25744004 attagtgagaagagttattttacgaagttactagagtaaaactaagactttactgtttagtgaccgttagtgacattataccgataattaaccgttatta 25744103  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||| | ||| |||||||| |||||||||||||||||    
T  25744104 gtgaaataccgttgtttgtgtagaaacattttgatgtgaatagaaatggattacgtccattaagttgagggttaggccca 25744183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 25633263 - 25633430
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||  ||||||||||| |||||||||||||||||| ||||| |    
T  25633263 gttgttttactaagttactagagtaaaattaagattttactgtttagtgaccattagtgacattttaccgttatttgaccgttattagtgaattaccggt 25633362  T
Q  115 gtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
      | |||||||||| |||  |||||||| ||||||  ||||||||| ||| || ||||||||||||||    
T  25633363 tagagtgtagaaacatttaagatgtgaatagaaatgagttaagtccgttaagtggagggttaggccca 25633430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 18433361 - 18433119
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||           ||||||||    
T  18433361 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgtttgtgatattttacc-----------gttattag 18433273  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||| ||||| |  | |||||||||| |||  |||||||| ||||||  ||||||||||||| || ||||||||| |||||||||| |||||| |         
T  18433272 tgaattaccggttagagtgtagaaacatttgagatgtgaatagaaatgagttaagtccattaagtggagggttagacccattaaggagacttggtataaa 18433173  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagattttgttgga 257  Q
       | ||| ||||| ||||||||||||||||||||| |||||||||| || |||||    
T  18433172 aacc-tacacttatgagaaatttcctcacactttca-ttcataagatatttttgga 18433119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 18571014 - 18570826
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||| | ||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  18571014 attagtgagaatagttattttactaagttgcaagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttatta 18570915  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggg 188  Q
    ||||| ||||  |  | |||||||||| |||  |||||||| |||||| ||||||||||||| || |||||  ||||||||||||||||    
T  18570914 gtgaattacctgttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtttgagaattaggcccattaaggg 18570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 22441664 - 22441488
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| |||||||||||||||| |||||||||||||| ||||| |||| ||| ||||  ||||||||||| |||||||||||||    
T  22441664 attagtgagaaccgttgttttactaagttactagagtagaattaagattttaccgtttaatgaccgttagtgacattttaccgttacttgaccgttatta 22441565  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttagg 177  Q
    ||||| ||| | |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| |||||||||||||    
T  22441564 gtgaattacaggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagttgagggttagg 22441488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 32899469 - 32899349
Alignment:
Q  56 gtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggtta 154  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |||| |||| |||||| |||||    
T  32899469 gtttagtgaccgttggtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgtgtgtggaaacatttgtgatttgaatagaaatgggtta 32899370  T
Q  155 agtccattaggttgagggtta 175  Q
    |||| |||| |||||||||||    
T  32899369 agtctattaagttgagggtta 32899349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 14128226 - 14128288
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgac 65  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  14128226 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttaccgtttagtgac 14128288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 35008988 - 35009073
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||| |||||||||||| || ||||||||| |||||| ||| ||| ||||  |||||||||||    
T  35008988 attagtgagaatagttattttactaagctactagagtaaagttgagattttaccgtttagagaccgttagtgacattttaccgtta 35009073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 13014238 - 13014309
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtga 74  Q
    ||||| ||||||||| |||| |||||||||||| |||||| |||||||||||  ||||||||| ||| ||||    
T  13014238 ttagtgagaatagttattttactaagttactagggtaaaactaagattttaccatttagtgaccgttagtga 13014309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 25366829 - 25366891
Alignment:
Q  72 tgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaaccttttg 134  Q
    |||| |||||||||||| |||||||||||||| |  |||||||||| |||||||||| |||||    
T  25366829 tgatattttaccgttaagtgaccgttattagtaatttaccgttgtgtgtgtagaaacattttg 25366891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 13620351 - 13620435
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  13620351 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgactgttggtgacattttaccgtta 13620435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 18584039 - 18583954
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| |||||||||||||||| | || |||||||||  |||||||||  || ||||  |||||||||||    
T  18584039 attagtgagaatagttattttactaagttactagagtatagttgagattttaccatttagtgaccattggtgacattttaccgtta 18583954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 18777657 - 18777616
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  18777657 tactcttatgagaaatttcctcacactttcattccataagat 18777616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 19982826 - 19982910
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  19982826 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 19982910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 23148697 - 23148634
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgaca 66  Q
    |||||| ||||||||| |||| ||||||||||||||| |||||  |||||||| |||||||||||    
T  23148697 attagtgagaatagttattttactaagttactagagt-aaattgggattttaccgtttagtgaca 23148634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 18570797 - 18570767
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  18570797 gaaatttcctcacactttcatttcataagat 18570767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 18583960 - 18583867
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaag-aaattggttaagtccattaggttgagggttaggcccatta 184  Q
    ||||||||||||||| |||| || || |||||||||| ||||| | |||| || |||| |||||| |||||||||||  |  ||||||||||||    
T  18583960 accgttattagtgaattacctttttgagtgtagaaacattttggtttgaatagaaaatgggttaattccattaggttttgatttaggcccatta 18583867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29666561 - 29666481
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttacc 83  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||  ||| ||||| |||||||    
T  29666561 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgatcgttagtgatattttacc 29666481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 35014690 - 35014774
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| ||||| |||| ||| ||||  |||||||||||    
T  35014690 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttattgaccgttagtgacattttaccgtta 35014774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 21410637 - 21410693
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||| |||||||||||||| |  |||||||| | |||||||||| ||||    
T  21410637 ttttaccgttaagtgaccgttattagtaatttaccgttgagtgtgtagaaacatttt 21410693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 32899313 - 32899277
Alignment:
Q  212 ttataagaaatttcctcacactttcatttcataagat 248  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32899313 ttatgagaaatttcctcacactttcacttcataagat 32899277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 20813064 - 20813258
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | ||||||||||||    
T  20813064 ttagtaagaatagttgttttactaagttactagagtaaaattaagattttaccgtttagtgactgtttgtgatattttaccgttattcgaccgttattag 20813163  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    | ||||||||||||||| |||||||| ||| |||| |||| |||||| |||||||||||||| || ||| |||||||||||||||||||||||||    
T  20813164 taaaataccgttgtgggggtagaaacatttgtgatttgaatagaaatgggttaagtccattaagtggagagttaggcccattaaggggacttgat 20813258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 23269463 - 23269629
Alignment:
Q  16 ttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||| |     
T  23269463 ttgttttactaagttacgagagtaaaattaagattttaccgtttagtgaccgttagtgatattttaccgttacttgaccgttattagtgaattaccgatt 23269562  T
Q  116 tgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
     | |||||||||| |||  |||||||| |||||| |||||||||||||| |||||||||||||||||    
T  23269563 ggagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagttgagggttaggccca 23269629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 44056619 - 44056469
Alignment:
Q  31 actagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacc 129  Q
    |||||||||| |||| | ||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||     
T  44056619 actagagtaataattgatattttaccgtttagtgaccgttggtgatgtttcaccgttaattgaccgttattagtgaaataccgttgtgtgtgtagaaaca 44056520  T
Q  130 ttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    ||| |||| |||| |||||| |||||||||||||| |||||||||||||||    
T  44056519 tttgtgatttgaatagaaatgggttaagtccattaagttgagggttaggcc 44056469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 44347555 - 44347375
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| |||  |||  ||||||||||| |||||||||||||    
T  44347555 attagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgaccgttaatgacattttaccgttacttgaccgttatta 44347456  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| ||||| |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| || ||||||||||||||    
T  44347455 gtgaattaccgattagagtgtagaaacatttttgttttgaatagaaatgggttaagtccattaagtggagggttaggccca 44347375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 34395989 - 34395799
Alignment:
Q  4 tagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagt 103  Q
    |||| ||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||  || ||||  ||||||||||| |||||||||||||||    
T  34395989 tagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgaccattggtgacattttaccgttacttgaccgttattagt 34395890  T
Q  104 gaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
     || ||||| |  | || ||||||| |||  |||||||| |||||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  34395889 taattaccggttagagtatagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt 34395799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 53907226 - 53907404
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| |||||| || |||| |||||||||||||||||| | ||| |||||| |||||||||| ||| ||||   |||||||||| | |||||||||||    
T  53907226 attagtgagaatatttattttactaagttactagagtaaact-aaggttttaccgtttagtgaccgttagtgacaatttaccgttactcgaccgttatta 53907324  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    || ||||| ||||  | |||||||||| ||||| | ||||||||||| |||||||||||||| |||||||||||||||||    
T  53907325 gttaaatatcgtttggagtgtagaaacattttggtttgaaaagaaatgggttaagtccattaagttgagggttaggccca 53907404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 21959004 - 21959219
Alignment:
Q  28 gttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaa 126  Q
    ||||||||||||| || | | |||||||  |||||||||  || ||||||||||||||||| | ||| |||||||||||| |||||||||| | ||||||    
T  21959004 gttactagagtaataagtgatattttaccatttagtgaccattggtgatgttttaccgttattcgactgttattagtgaattaccgttgtgtgggtagaa 21959103  T
Q  127 accttttg-atgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttc 225  Q
    || ||||  || |||| |||||| |||||||||||||| || ||| |||||||||||||||||||||||||        | || |||||| ||||||||     
T  21959104 acattttttatttgaatagaaatgggttaagtccattaagtggagagttaggcccattaaggggacttgatataaaaacc-tagtcttatgagaaatttt 21959202  T
Q  226 ctcacactttcatttca 242  Q
    |||||||||||||||||    
T  21959203 ctcacactttcatttca 21959219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 30458624 - 30458392
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||           ||||||||    
T  30458624 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgatattttacc-----------gttattag 30458536  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||| |||||||  | |||||||| | |||  |||||||| ||||||  ||||||||||||  || |||||||||||||||||||| |||||| |         
T  30458535 tgaattaccgtt-agagtgtagaagcatttaagatgtgaatagaaatgagttaagtccattgagtggagggttaggcccattaaggagacttggtataaa 30458437  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
       | ||| ||||| ||||||||||||||||||||| ||||||||||    
T  30458436 aacc-tacacttatgagaaatttcctcacactttca-ttcataagat 30458392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 16732904 - 16732658
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| |||||||| ||||||||||||||| |||||| |||||||||| ||| ||  | ||||||| ||| |||||||||||||    
T  16732904 attagtgagaaccgttgttttactaagttattagagtaaaattaaggttttaccgtttagtgaccgttggtagtattttaccattatttgaccgttatta 16732805  T
Q  102 gtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnnn 199  Q
    ||| | |||||||||| || ||||||| |||| ||| |||   ||||| |||||| |||||| || || || ||||||||||| | ||||||||| |       
T  16732804 gtg-attaccgttgtgtgtatagaaacattttagatttgagttgaaatgggttaaatccattaagctttagagttaggcccatcagggggacttgctata 16732706  T
Q  200 nnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
         | |  ||||| | |||||||||||||||||||||||||||||||    
T  16732705 aaaacc-ttgtcttagaggaaatttcctcacactttcatttcataagat 16732658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 5682050 - 5682197
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||   |||||||||||||||||||| ||||||||| |||||||||| ||| ||||  ||||||||||| |||| ||||||||    
T  5682050 attagtgagaatagttatttcattaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgttacttgatcgttatta 5682149  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaat 148  Q
    || || ||||| |  | |||||||||| |||  |||||||| ||||||    
T  5682150 gttaattaccggttagagtgtagaaacatttgagatgtgaatagaaat 5682197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 8871997 - 8872180
Alignment:
Q  11 aatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaatac 110  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||||| |||| ||||| ||| ||||  || |||||||| || |||||||||||  || ||     
T  8871997 aatagttattttactaagttgctagagtaaaactaagattttaccgtttggtgaccgttagtgacattctaccgttacttaaccgttattagctaattat 8872096  T
Q  111 cgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    || |  | ||||||||||  ||||| | |||| | |||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  8872097 cggtcagagtgtagaaacatttttggtttgaatataaatgggttaagtccattaagtggagggttaggcccaataaggagactt 8872180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 53704268 - 53704367
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||| | |||| ||||||||||||||||||||| ||||||||| |||||||||  ||| ||||  ||||||||||| |||||||||||||    
T  53704268 attagtgagaatagctattttactaagttactagagtaaaattgagattttaccgtttagtgatcgttagtgacattttaccgttacttgaccgttatta 53704367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 54117802 - 54117887
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||  |||||||||||    
T  54117802 attagtgagaatagttattttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgtta 54117887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 30232090 - 30232255
Alignment:
Q  83 cgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| |||||||||||| ||||  |||||||  | |||||||||| |||| | | |||| | |||| |||||||||||||| |||||||||||||||||    
T  30232090 cgttatttgaccgttatttgtgatttaccgtttggagtgtagaaacatttttggtttgaataaaaatgggttaagtccattaagttgagggttaggccca 30232189  T
Q  182 ttaaggggacttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
    || | ||||||| |         | || |||||| ||||||||||||||||||||||||||||||||    
T  30232190 tttatgggactt-actacaaaaacctagtcttatgagaaatttcctcacactttcatttcataagat 30232255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 819535 - 819685
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaagggga 190  Q
    |||||||||| |||| ||||| |  | |||||||||| |||  |||||||| |||||| |||||||||||||| ||||||||| || |||||||||| ||    
T  819535 accgttattaatgaattaccggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagttgagggtcagacccattaaggaga 819634  T
Q  191 cttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatttca 242  Q
    ||||||        | |||  |||| ||||||||||||||||||||||||||    
T  819635 cttgatataaaaacc-tacatttatgagaaatttcctcacactttcatttca 819685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 55376145 - 55376225
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaa 106  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||| ||||  | |||||| ||||| |||||||||||||||    
T  55376145 taagttactagagtaaaattgagattttaccgtttagtgaccgttagtgacatcttaccg-taattaaccgttattagtgaa 55376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 18493947 - 18494031
Alignment:
Q  108 taccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggac 191  Q
    |||| ||||| |||||||||| |||| ||| |||| |||||| |||||||||||||| | | ||||||||||||||| |||||||    
T  18493947 taccattgtgtgtgtagaaacattttagatttgaatagaaatgggttaagtccattaaggttagggttaggcccatttaggggac 18494031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 12836853 - 12836953
Alignment:
Q  138 tgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttcctcacactttca 237  Q
    |||| |||||| |||||||||||||| || |||||||||||||| ||||| ||||| |         | ||||||||| |||||||||||||||||||||    
T  12836853 tgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt-agtataaaaacctactcttatgagaaatttcctcacactttca 12836951  T
Q  238 tt 239  Q
    ||    
T  12836952 tt 12836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 45458460 - 45458565
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggtt-gagggttaggcccattaagggga 190  Q
    ||||||||||||||| ||||| |||| ||||| |||  ||||   ||||   ||||| |||||| ||||||| ||| ||| |||||||||||||||||||    
T  45458460 accgttattagtgaattaccgctgtgtgtgtataaatgttttagagtgagttgaaatgggttaaatccattaagtttgagagttaggcccattaagggga 45458559  T
Q  191 cttgat 196  Q
    ||||||    
T  45458560 cttgat 45458565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 25118719 - 25118802
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  25118719 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 25118802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 37956599 - 37956654
Alignment:
Q  78 tttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    ||||||||||| |||||||||||||| || |||||||| | |||||||||| ||||    
T  37956599 tttaccgttaagtgaccgttattagtaaattaccgttgagtgtgtagaaacatttt 37956654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 122592 - 122511
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccg 84  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||| ||| ||||  ||||||||    
T  122592 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaccgttagtgacattttaccg 122511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 819455 - 819519
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgac 65  Q
    |||||| ||||  |||||||| ||||||||||||||||| ||||| | |||||| ||||||||||    
T  819455 attagtgagaaccgttgttttactaagttactagagtaataattatggttttaccgtttagtgac 819519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 22402624 - 22402817
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||    
T  22402624 attagtaaaaatagttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgatattttaccgttatttgaccgttatta 22402723  T
Q  102 gtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
    ||||| ||||| |  | |||||||||| |||| |||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  22402724 gtgaattaccggttagagtgtagaaacattttagatgtgaatagaaatgggttgagtccattaagttgagggttaggcccattaaggggacttg 22402817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 35055480 - 35055313
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||||| || |||||||    
T  35055480 attagtgagaaccgttgttttacaaagttactagagtaaaattaagattttaccgtttagtgaccgttggtgacattttaccgttaattaactgttatta 35055381  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttga 169  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  35055380 gtgaaataccgttgtatgtgtagaaacattttgatgtgaaaagaaatgggttaagtccattaagttga 35055313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 41212751 - 41212575
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||  ||||||||||| || ||||||||||    
T  41212751 attagtgagaatagttattttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgttacttcaccgttatta 41212652  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttagg 177  Q
    || || ||||| |  | |||||||||| |||  |||||||| |||||| |||||||||||||| |||||||||||||    
T  41212651 gttaattaccggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagttgagggttagg 41212575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 21718936 - 21718714
Alignment:
Q  28 gttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaa 126  Q
    ||||||| ||||| |||| | ||||||| |||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||| ||||   ||||||    
T  21718936 gttactaaagtaataattgatattttaccgtttagtgaccgttggtgatgttttaccgttgtttgaccgttattagtgaattaccgctgtgtaggtagaa 21718837  T
Q  127 ac-cttttgatgtgaaaagaaattggttaagtccatta-ggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaattt 224  Q
    ||  ||||||| |||| |||||| |||||| ||||||| |||| || |||||||||||||||||||||||||        | | |||||| | |||||||    
T  21718836 acatttttgatttgaatagaaatgggttaaatccattagggttcagagttaggcccattaaggggacttgatataaaaacc-ttctcttagaggaaattt 21718738  T
Q  225 cctcacactttcatttcataagat 248  Q
    ||||||||||||||||||||||||    
T  21718737 cctcacactttcatttcataagat 21718714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 35521859 - 35522057
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| ||||||||||||||||| |||| | |||||||  ||||| ||| ||| ||||||||||||||||| ||||||||||||    
T  35521859 attagtgagaaccgttgttttactaagttactagagtaataattgatattttaccatttagagaccgttggtgatgttttaccgttatttgaccgttatt 35521958  T
Q  101 agtgaaa-----taccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggactt 193  Q
    ||| |||     |||| || || |||||||||| ||||||| |||| ||||||  |||||||||||| || ||||| ||||||||||||||||||||||    
T  35521959 agttaaatatcgtaccattctgtgtgtagaaacattttgatttgaatagaaatgagttaagtccattaagtttgagagttaggcccattaaggggactt 35522057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 27329278 - 27329465
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| |||| |||||||||||| ||||||| |||||| ||| |||||| ||| ||||  |||||| |||| ||||||||||||    
T  27329278 attagtgagaactgttgttttactaaattactagagtaataattaaggttttaccgtt-agtgaccgttggtgacattttactgttatttgaccgttatt 27329376  T
Q  101 agtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaagg 187  Q
    |||||  |||||||||| |||||||||| |||| |||||||| |||||| |||||| |||||| || ||||| ||||||||| ||||||    
T  27329377 agtgatttaccgttgtgagtgtagaaacattttagatgtgaatagaaatgggttaaatccattaagtttgagagttaggcccgttaagg 27329465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 44320352 - 44320257
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgtt 97  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| ||| || |  ||||||||||| |||||||||    
T  44320352 attagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtaacattttaccgttacttgaccgtt 44320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 20887362 - 20887444
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccg 84  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||  ||||||||    
T  20887362 attagtgagaatagttattttactaagttactagagtaaaattgagattttactgtttagtgaccgttagtgacattttaccg 20887444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 13103854 - 13103769
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||  |||||||||||    
T  13103854 attagtgagaatagttattttactaagttactagagtaaaattgagattttacggtttagtgaccgttagtgacattttaccgtta 13103769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 20346679 - 20346562
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    ||||||| ||| ||||||||||||||| || ||||| |  | |||||||||| |||| | | |||| |||||| |||||||||||||| || ||||||||    
T  20346679 ttttacctttacttgaccgttattagttaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagtggagggtta 20346580  T
Q  176 ggcccattaaggggactt 193  Q
    |||||| ||||| |||||    
T  20346579 ggcccaataaggagactt 20346562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 41219109 - 41219060
Alignment:
Q  17 tgttttcctaagttactagagtaaaattaagattttactgtttagtgaca 66  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  41219109 tgttttactaagttactagagtaaaattaagattttaccgtttagtgaca 41219060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 49968292 - 49968145
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttg-atgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaagggga 190  Q
    ||||||||||||||| ||||| |  | |||||||||| |||   ||||||| |||||| ||||||||||| || || ||| |||||||||||||||||||    
T  49968292 accgttattagtgaattaccggttagagtgtagaaacatttgatatgtgaatagaaatgggttaagtccactaagtggagagttaggcccattaagggga 49968193  T
Q  191 cttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatt 239  Q
    |||| |        | ||| ||||| |||||||||||||||||||||||    
T  49968192 cttggtataaaaacc-tacacttatgagaaatttcctcacactttcatt 49968145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20346726 - 20346674
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||    
T  20346726 attagtgagaatagttattttactaagttactagagtaaaattgagattttac 20346674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 20932039 - 20931955
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  20932039 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 20931955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 21860731 - 21860647
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  21860731 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 21860647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 16646630 - 16646515
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| |||||||||||| |||  |||||  ||||||| ||| |||||| ||| || || |||||||||||| ||||||||| ||||    ||||||||||    
T  16646630 ttttactaagttactagggtagtaattagtattttaccgttaagtgaccgttggtaatattttaccgttaagtgaccgttaatagtattttaccgttgtg 16646531  T
Q  118 ggtgtagaaacctttt 133  Q
     |||||||||| ||||    
T  16646530 agtgtagaaacatttt 16646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 20446357 - 20446296
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  20446357 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 20446296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 20532121 - 20532060
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  20532121 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 20532060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 27329487 - 27329525
Alignment:
Q  210 tcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||| | |||||||||||||||||||||||||||||||    
T  27329487 tcttagaggaaatttcctcacactttcatttcataagat 27329525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 41219055 - 41218962
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattgg-ttaagtccattaggttgagggttaggcccatta 184  Q
    ||||||||||||||| ||||| |  | |||||||||| ||||| | |||| ||||| ||| ||||||||||||||||   |||||||| |||||    
T  41219055 accgttattagtgaattaccggttagagtgtagaaacattttgttttgaatagaaaatgggttaagtccattaggtttttggttaggctcatta 41218962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 44034505 - 44034589
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||| ||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  44034505 attagtgagaatagttatttcattaagttactagggtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 44034589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 54424742 - 54424550
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| ||||||||||||||    
T  54424742 ttagtaagaatagttggtttactaaattactagagtaaaattaagattttaccgtttagtgaccgttagtgatattttaccgttatttgaccgttattag 54424643  T
Q  103 tgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
    |||| ||||| |  | |||||||||| |||| |||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  54424642 tgaattaccgattagagtgtagaaacattttagatgtgaatagaaatgggttaagtccattaagttgaaggttaggcccattaaggggacttg 54424550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 6146300 - 6146480
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||  ||||||||||  |||||||||||||||| | |||||||    
T  6146300 gttgttttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgttgtttgaccgttattagtggattaccgtt 6146399  T
Q  115 gtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    | | |||||||||| ||||| | |||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6146400 g-gagtgtagaaacattttggtttgaatagaaatgggttaagtccattaagttgagggttaggcccattaaggagacttgat 6146480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 13818242 - 13818062
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  13818242 attagtgagaatagttattttcctaagttactagagtaaaactaagattttaccgtttagtgactgttagtgacattttaccgttacttgaccgttatta 13818143  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| ||||  |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| |||||||||||||||||    
T  13818142 gtgaattaccagttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagttgagggttaggccca 13818062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 35124404 - 35124245
Alignment:
Q  28 gttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaa 126  Q
    ||||||| ||||| |||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||| | ||||||    
T  35124404 gttactaaagtaataattgatattttaccgtttagtgaccgtttgtgatgttttaccgttatttgaccgttattaatgaattaccgttgtgtgggtagaa 35124305  T
Q  127 ac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaa 185  Q
    ||  ||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||    
T  35124304 acatttttgatttgaacagaaatgggttaagtccattaagttgagggttaggcccattaa 35124245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 16181464 - 16181657
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  ||||| || ||||||||||||||||||||||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  16181464 attagtgagaaccgttgtcttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttatta 16181563  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
    ||||| || || |    ||||||||||  ||||||| | || |||||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  16181564 gtgaattatcggttatagtgtagaaacatttttgattttaatagaaatgggttaagtccattaagtagagggttaggcccaataaggggacttg 16181657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 17102066 - 17101875
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||| ||||||| ||||  ||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||    
T  17102066 attagtgagaaccgttgttttactaagttacaagagtaacattagcattttaccgtttagtggccgttggtgatgttttaccgttatttgaccgttatta 17101967  T
Q  102 gtgaaataccgttgtgggtgtagaaa-ccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    |||||||| || |||| |||||||||   || |||| |||| |||||| |||||||||||| | ||||||||||||||||| ||||| |||||    
T  17101966 gtgaaatatcg-tgtgtgtgtagaaataattgtgatttgaatagaaatgggttaagtccatcaagttgagggttaggcccaataaggagactt 17101875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 19570206 - 19570386
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| ||||| |||||||    
T  19570206 attagtgagaaccgttgttttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgactgttatta 19570305  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| ||||| |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| ||||||||||| |||||    
T  19570306 gtgaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagttgagggttatgccca 19570386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 6153862 - 6154042
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| |||||||| |||||||||||| ||||||||  |||||||||| ||| ||||  ||||||||||  |||||||||||||||| |||||||||    
T  6153862 gttgttttactaagttaatagagtaaaattgagattttatcgtttagtgaccgttagtgacattttaccgttgtttgaccgttattagtggaataccgtt 6153961  T
Q  115 gtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    | | | || ||||| ||||| | |||| ||||||  ||||||| ||||| |||||||||||| |||||||||| ||||||||    
T  6153962 g-gagggtggaaacattttggtttgaatagaaatgagttaagttcattaagttgagggttagacccattaaggagacttgat 6154042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 38528455 - 38528265
Alignment:
Q  4 tagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagt 103  Q
    |||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||  |||  ||| ||||||| |||| |||||||||||||||    
T  38528455 tagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgatcgttaatgacgttttacagttacttgaccgttattagt 38528356  T
Q  104 gaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    ||| ||||| |  | ||||||||||  ||||  | |||| |||||| |||||||||||||| || |||| ||||||||| ||||| |||||    
T  38528355 gaattaccggttagagtgtagaaacattttttgtttgaatagaaatgggttaagtccattaagtggaggattaggcccaataaggagactt 38528265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 317025 - 317210
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| | ||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  317025 attagtgataatagttattttactaagttactatagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttatta 317124  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaag 186  Q
    || || ||||| |  | || ||||||| |||  |||||||| |||||| |||||||||||||| || ||||| |||||||| ||||    
T  317125 gttaattaccggttagagtatagaaacatttgagatgtgaatagaaataggttaagtccattaagtggaggggtaggcccaataag 317210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 53898133 - 53898290
Alignment:
Q  28 gttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaa 126  Q
    ||||||||||||| |||| | ||||||  |||||||||| ||| ||||||||||||||||| | |||| ||||||||||| |||||||||| | ||||||    
T  53898133 gttactagagtaataattgatattttatcgtttagtgaccgttggtgatgttttaccgttattcgaccattattagtgaattaccgttgtgtgggtagaa 53898232  T
Q  127 ac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    ||  ||||||| |||| |||||| |||||||||||||| ||||||||||| |||||||    
T  53898233 acatttttgatttgaatagaaatgggttaagtccattaagttgagggttatgcccatt 53898290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 14304753 - 14304581
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||| ||||| ||||| |||||||| ||||||||||||||| |  ||||||| |||||||    
T  14304753 agttactagagtaataattagtattttaccgtttagtgactgttggtgatattttatcgttaattaaccgttattagtgaattgtcgttgtgtgtgtaga 14304654  T
Q  126 aacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgat 196  Q
    ||| |||| |||||||   ||||| |||||| |||||| || ||||| |||||||||||||||||||||||||    
T  14304653 aacattttagatgtgagttgaaatgggttaaatccattaagtttgagagttaggcccattaaggggacttgat 14304581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 50111655 - 50111811
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaagggga 190  Q
    ||||||||||||||| |||||||||| |||||||||| |||| ||| |||| |||| | |||||||||||||| || ||| ||||||||||||||||| |    
T  50111655 accgttattagtgaattaccgttgtgtgtgtagaaacatttttgatttgaatagaattgggttaagtccattaagtagagagttaggcccattaagggaa 50111754  T
Q  191 cttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||||        | |  |||||| ||||||||||||||||||||||||||||||||    
T  50111755 cttgatataaaaacc-tggtcttatgagaaatttcctcacactttcatttcataagat 50111811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 14296158 - 14295980
Alignment:
Q  15 gttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||||| ||||| |||||| ||||||| ||||||| || ||| ||  | |||||||||||||||||||||||||||||  ||||||    
T  14296158 gttgttttactaagttactaaagtaataattaatattttaccgtttagttaccgttggtagtattttaccgttaattgaccgttattagtgatttaccgt 14296059  T
Q  114 tgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtcca-ttaggttgagggttaggcccattaaggggac 191  Q
    |||  |||||||||| ||| ||| |||   | ||| |||||| |||| | || || |||||||||||||||||||||||    
T  14296058 tgtatgtgtagaaacatttagatttgagttggaatgggttaaatccactaagctttagggttaggcccattaaggggac 14295980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 14301785 - 14301607
Alignment:
Q  15 gttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||||| ||||| |||||| ||||||| ||||||| || ||| ||  | |||||||||||||||||||||||||||||  ||||||    
T  14301785 gttgttttactaagttactaaagtaataattaatattttaccgtttagttaccgttggtagtattttaccgttaattgaccgttattagtgatttaccgt 14301686  T
Q  114 tgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtcca-ttaggttgagggttaggcccattaaggggac 191  Q
    |||  |||||||||| ||| ||| |||   | ||| |||||| |||| | || || |||||||||||||||||||||||    
T  14301685 tgtatgtgtagaaacatttagatttgagttggaatgggttaaatccactaagctttagggttaggcccattaaggggac 14301607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 34438882 - 34439036
Alignment:
Q  17 tgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgt 116  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||           ||||||||||||||| ||||| |      
T  34438882 tgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgatatttt-----------accgttattagtgaattaccggtta 34438970  T
Q  117 gggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    | |||||||||| |||  |||||||| ||||||  ||||||||||||| ||||||| |||||||||    
T  34438971 gagtgtagaaacatttgagatgtgaatagaaatgagttaagtccattaagttgaggattaggccca 34439036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 15856797 - 15856882
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||| ||| ||||  |||||||||||    
T  15856797 attagtgagaatagttattttactaagttactagagtaaaattgagattttactgtttagcgaccgttagtgacattttaccgtta 15856882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 30207909 - 30207757
Alignment:
Q  42 attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtga 140  Q
    ||||| ||||||| ||| ||||||  ||  |||| ||||||||||| ||||||||| |||||||| |||||||  | |||||||||| |||  |||||||    
T  30207909 attaatattttaccgttaagtgaccattgttgatattttaccgttatttgaccgttgttagtgaattaccgtta-gagtgtagaaacatttgagatgtga 30207811  T
Q  141 aaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
    | |||||| |||||||| |  || |||||| |||||||||||||||||||||||    
T  30207810 atagaaatgggttaagttctataagttgagagttaggcccattaaggggacttg 30207757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 11060537 - 11060647
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| ||||||||||||||||  |||||| ||||||| |||||||||| ||| || |  |||||||||||||||| ||||||||||||  |||||||| |    
T  11060537 ttttactaagttactagagtagtaattaatattttaccgtttagtgaccgttggtaaaattttaccgttaattgatcgttattagtgatttaccgttggg 11060636  T
Q  118 ggtgtagaaac 128  Q
     ||||||||||    
T  11060637 tgtgtagaaac 11060647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 16995652 - 16995762
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    ||||||||||| ||||||||||||||| || ||||| |  | |||||||||| |||  |||||||| |||||| |||||||||||||| || ||||||||    
T  16995652 ttttaccgttacttgaccgttattagttaattaccggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggtta 16995751  T
Q  176 ggcccattaag 186  Q
    |||||| ||||    
T  16995752 ggcccaataag 16995762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 13836338 - 13836278
Alignment:
Q  4 tagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtga 64  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  13836338 tagtgagaatagttgttttactaagttactagagtaaaattaagatattaccgtttagtga 13836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12348825 - 12348886
Alignment:
Q  1 aattagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagt 62  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||    
T  12348825 aattagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagt 12348886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 40939806 - 40939735
Alignment:
Q  56 gtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaa 127  Q
    |||||||||| ||| ||  | |||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  40939806 gtttagtgaccgttggtagtattttaccgttaattgaccgttattagtgaattaccgttgtgtgtatagaaa 40939735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 3993271 - 3993187
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || |||||||||||||||||||| ||| ||||  |||||||||||    
T  3993271 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttactgtttagtgactgttagtgacattttaccgtta 3993187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 13836219 - 13836158
Alignment:
Q  134 gatgtgaaaagaaattggttaagtccattaggtt-gagggttaggcccattaaggggacttg 194  Q
    |||||||| |||||| |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  13836219 gatgtgaatagaaatgggttaagtccattaagtttgagagttaggcccattaaggggacttg 13836158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 17912142 - 17912203
Alignment:
Q  123 agaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||||| ||| |||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  17912142 agaaacatttggatgtgaatagaaatgggttaagtccattaggttttgggttaggcccatta 17912203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22143850 - 22143903
Alignment:
Q  1 aattagtaagaatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  22143850 aattagtgagaatagttattttactaagttactagagtaaaactaagattttac 22143903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 13839515 - 13839422
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaag-aaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||||||| || |||| ||  | |||||||||| ||||||| || | || |||| ||||||||||||||||||  |||||||||||||||    
T  13839515 accgttattagttaattaccttttggagtgtagaaacattttgatttggatagcaaatgggttaagtccattaggttttgggttaggcccatta 13839422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 17912033 - 17912117
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||| | |||||||| |  |||||||| ||| ||||  |||||||||||    
T  17912033 attagtgagaatagttattttactaagttactagagtaaaacttagatttta-tcgttagtgaccgttagtgacattttaccgtta 17912117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 19260384 - 19260468
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  19260384 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 19260468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 55192685 - 55192629
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||| ||||||||||||||||  ||||||| || |||||||||| ||||    
T  55192685 ttttaccgttaagtgaccgttattagtgatttaccgttatgtgtgtagaaacatttt 55192629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 3578744 - 3578693
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaac 128  Q
    |||||||||||| ||||||||||| ||||  |||||||||| ||||||||||    
T  3578744 ttttaccgttaaatgaccgttatttgtgatttaccgttgtgtgtgtagaaac 3578693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 12348918 - 12348977
Alignment:
Q  134 gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    |||||||| |||||| | |||||||||||| || |||||||||||||| ||||| |||||    
T  12348918 gatgtgaatagaaatggattaagtccattaagtggagggttaggcccaataaggagactt 12348977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 16995614 - 16995657
Alignment:
Q  11 aatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||    
T  16995614 aatagttattttactaagttactagagtaaaactaagattttac 16995657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 2844888 - 2844827
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  2844888 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 2844827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 12349001 - 12349031
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  12349001 gaaatttcctcacactttcatttcataagat 12349031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 14527614 - 14527696
Alignment:
Q  24 ctaagttactagagtaaaa-ttaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtga 105  Q
    ||||||||||||| || || |||| ||||||| | |||||||  ||| ||||| |||||||||||  ||||||||||||||||    
T  14527614 ctaagttactagattagaagttaatattttaccgattagtgatcgttggtgatattttaccgttatgtgaccgttattagtga 14527696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 17522620 - 17522650
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  17522620 gaaatttcctcacactttcatttcataagat 17522650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 28558870 - 28558809
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  28558870 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 28558809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 55440589 - 55440619
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  55440589 gaaatttcctcacactttcatttcataagat 55440619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 7854625 - 7854532
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattgg-ttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||||||| || |||| || |  |||||||||| ||||| | |||| ||||| ||| |||||| |||||||||  |||||||||||||||    
T  7854625 accgttattagttaattaccttttttagtgtagaaacattttggtttgaatagaaaatgggttaagttcattaggttttgggttaggcccatta 7854532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 12029727 - 12029811
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||  |||||||||| ||| ||||  |||||||||||    
T  12029727 attagtgagaatagttatttcattaagttactagagt-aaattgagattttatcgtttagtgaccgttagtgacattttaccgtta 12029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 17101239 - 17101190
Alignment:
Q  144 gaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    ||||| |||||||||||| | ||||||||||||||||| ||||| |||||    
T  17101239 gaaatgggttaagtccatcaagttgagggttaggcccaataaggagactt 17101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 33342598 - 33342514
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||  ||| ||||  |||||||||||    
T  33342598 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgatcgttagtgacattttaccgtta 33342514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 45582334 - 45582250
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||| |||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  45582334 attagtgagaatagttatttcattaagttactatagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 45582250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 51960664 - 51960749
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || |||||||||  ||||| ||| ||| ||||  |||||||||||    
T  51960664 attagtgagaatagttatttcattaagttactagagtaaagttgagattttaccatttagagaccgttagtgacattttaccgtta 51960749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 19232489 - 19232406
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || |||||||||  ||||||||| ||| ||||  |||||||||||    
T  19232489 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccatttagtgaccgttagtgacattttaccgtta 19232406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 38168620 - 38168553
Alignment:
Q  19 ttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||| |||||||||||||||||  || | ||||||| |||||||||| ||| ||||| |||||||||||    
T  38168620 ttttactaagttactagagtaag-ttgacattttaccgtttagtgaccgttagtgatattttaccgtta 38168553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 11173 - 11407
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||    
T  11173 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttactgtttagtgaccgttggtgatattttaccgtt-attgaccgttattag 11271  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||| |||||||  | |||||||||| |||  |||| ||| |||||| |||||||||||||| || |||||||||||||||||||| |||||| |         
T  11272 tgaattaccgtt-agagtgtagaaacatttgagatgcgaatagaaatgggttaagtccattaagtggagggttaggcccattaaggagacttggtataaa 11370  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatt 239  Q
       | ||| ||||| |||||||||||||||||||||||    
T  11371 aacc-tacacttatgagaaatttcctcacactttcatt 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 2023 - 1801
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagatttt-actgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||| ||||||||||| ||||||| || |||||||||| ||| ||||| |||||||||||           |||||||| |||||     
T  2023 gttgttttactaagttacaagagtaaaatttagatttttaccgtttagtgaccgttggtgatattttaccgtta-----------ttagtgaattaccgg 1935  T
Q  114 tgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactctt 213  Q
    |  | |||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||   | ||| | |         | |||||||    
T  1934 ttagtgtgtagaaacattttgatgtgaatagaaatgggttaagtccattagtttgagggttaggcccatttgtgagacat-actataaaaacctactctt 1836  T
Q  214 ataagaaatttcctcacactttcatttcataagat 248  Q
    || ||||||||||||||||||||||||||||||||    
T  1835 atgagaaatttcctcacactttcatttcataagat 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 23421 - 23177
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||  || ||||| ||||||||||| || |||||||||||    
T  23421 ttagtaagaatagttgttttactaagttactagagtaaaattatgattttaccgtttagtgaccattagtgatattttaccgttattttaccgttattag 23322  T
Q  103 tgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||| ||||| |  | |||||||||| |||| ||||||||  ||||| | |||||||||||| |||||| |||||||||||||||| |||||| |         
T  23321 tgaattaccggttagagtgtagaaacattttagatgtgaatcgaaatggattaagtccattaagttgagagttaggcccattaaggagacttggtataaa 23222  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
       | ||| ||||| ||||||||||||||||||||| ||||||||||    
T  23221 aacc-tacacttatgagaaatttcctcacactttca-ttcataagat 23177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 35642 - 35564
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgtttta 81  Q
    |||||||||||| ||||||  |||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||    
T  35642 ttagtaagaatatttgtttaactaagttactcgagtaaaattaagattttaccgtttagtgaccgttagtgatatttta 35564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 31940 - 31767
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| || |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||   |||| |||||||||||||||||||||||||    
T  31940 ttagtgagcatagtttttttactaagttactagagtaaaattaagattttaccgtttagtgactgttgaagatggtttaccgttaattgaccgttattag 31841  T
Q  103 tgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttag 176  Q
    ||| ||||| ||||  |||||||||| |||||||||||| ||||||  ||||||||||||| ||||||||||||    
T  31840 tgatataccattgtatgtgtagaaacattttgatgtgaatagaaatacgttaagtccattaagttgagggttag 31767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 47066 - 47239
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| || |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||   |||| |||||||||||||||||||||||||    
T  47066 ttagtgagcatagtttttttactaagttactagagtaaaattaagattttaccgtttagtgactgttgaagatggtttaccgttaattgaccgttattag 47165  T
Q  103 tgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttag 176  Q
    ||| ||||| ||||  |||||||||| |||||||||||| ||||||  ||||||||||||| ||||||||||||    
T  47166 tgatataccattgtatgtgtagaaacattttgatgtgaatagaaatacgttaagtccattaagttgagggttag 47239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 22220 - 22061
Alignment:
Q  13 tagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccg 112  Q
    |||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||| ||| | |||||||||||||||           ||||||| ||||||    
T  22220 tagttgttttactaagttactagattaaaattaatattttaccgttttgtgaccgttggagatgttttaccgtta-----------ttagtgatataccg 22132  T
Q  113 ttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    ||||  ||| |||||| |||||||||||| |||||| |||||||||| ||| |||||||||||||||||||    
T  22131 ttgtatgtgaagaaacattttgatgtgaatagaaataggttaagtccgttaagttgagggttaggcccatt 22061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 31737 - 31699
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataa 245  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31737 tactcttatgagaaatttcctcacactttcatttcataa 31699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 47269 - 47307
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataa 245  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47269 tactcttatgagaaatttcctcacactttcatttcataa 47307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 22038 - 21997
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  22038 tactcctatgagaaatttcctcacactttcatttcataagat 21997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 27535 - 27618
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagta-aaattaagattttactgtttagtgacagtttgtgatgttttaccg 84  Q
    |||||| |||||||||||||| |||||||| ||| |||  |||||  ||||||| |||||||||| |||  |||||||||||||    
T  27535 attagtgagaatagttgttttactaagttattagtgtagtaattagtattttaccgtttagtgaccgttaatgatgttttaccg 27618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 12369369 - 12369536
Alignment:
Q  16 ttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    ||||||| |||||| ||||||||||| |||||||||||  |||||||||| ||| ||||  ||||||||||| || ||||||| ||||||||||||||||    
T  12369369 ttgttttactaagtgactagagtaaagttaagattttatcgtttagtgaccgttggtgacattttaccgttatttaaccgttagtagtgaaataccgttg 12369468  T
Q  116 tgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    |  |||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||| ||||||    
T  12369469 tatgtgtagaaacattttgatgtgaatagaaatgggttaagtccattaagttgagggttagacccatt 12369536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 12759688 - 12759551
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||||||||||||| || ||||||  ||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  12759688 agttactagagtaataattaagattttaccgtgtagtgatcgttggtgatgttttaacgttaattgaccgttattagtgaaatatcgttgtgtgtgtaga 12759589  T
Q  126 aaccttttgatgtgaaaagaaattggttaagtccatta 163  Q
    ||| ||||||| |||| |||||| |||||| |||||||    
T  12759588 aacattttgatttgaatagaaatgggttaaatccatta 12759551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 47290512 - 47290328
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||| ||||  ||||||||||| |||||| |||| ||    
T  47290512 ttagtgagaatagttgttttactaagttaatagagtaaaattaagattttaccgtttagtgaccgttagtgacattttaccgttatttgaccattatgag 47290413  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaagg 187  Q
    |||| ||| |||  | |||||||||| |||  |||||||| |||||| |||||||||||||| ||  || ||||||||||||||||    
T  47290412 tgaattactgtt-agagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtgtagagttaggcccattaagg 47290328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 44865948 - 44865767
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| |||||||           ||||||||    
T  44865948 ttagtgagaatagttgttttactaagttactagagtaaaattaagattttaccgttaagtgaccgttagtgatattttacc-----------gttattag 44865860  T
Q  103 tgaaataccgttgtgggtgtagaaacctt-ttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
    |||| ||||| |  | |||||||||| || | |||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||    
T  44865859 tgaattaccggttagagtgtagaaacattgtagatgtgaatagaaatgagttaagtccattaagttgagggttaggcccattaaggggacttg 44865767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 3895732 - 3895509
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |          ||||||||||| ||||||||||||||| || ||||| |    
T  3895732 gttgttttactaagttactagagtaaaactaagattttaccgtttagtgata----------ttttaccgttacttgaccgttattagttaattaccgat 3895643  T
Q  115 gtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactctt 213  Q
      | |||||||||| |||  |||||||| |||||| |||||||||||||| || |||||||||||||| ||||| ||||| |         | |||||||    
T  3895642 tagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt-agtataaaaacctactctt 3895544  T
Q  214 ataagaaatttcctcacactttcatttcataagat 248  Q
    || ||||||||||||||||||||||||||||||||    
T  3895543 atgagaaatttcctcacactttcatttcataagat 3895509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 11288151 - 11287903
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaatt-aagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| ||||||||||||||||| ||| ||| |||||| |||||||||| ||| ||  | ||||| |||| |||||||||||||    
T  11288151 attagtgagaaccgttgttttactaagttactagagtaacatttaaggttttaccgtttagtgaccgttggtagtattttaacgtttattgaccgttatt 11288052  T
Q  101 agtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtcc-attaggttgagggttaggcccattaaggggacttgatnn 198  Q
    |||||| |||||||||| |||||||||| |||| ||| |||   ||||| |||||||||| || || ||||| ||||||||||||||||| ||||| |      
T  11288051 agtgaattaccgttgtgtgtgtagaaacattttagatttgagttgaaatgggttaagtccaataagtttgagagttaggcccattaagggcacttgctat 11287952  T
Q  199 nnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
          | |  ||||| | |||||||||||||||||||||||||||||||    
T  11287951 aaaaatc-ttgtcttagaggaaatttcctcacactttcatttcataagat 11287903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 16569532 - 16569646
Alignment:
Q  15 gttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||||||| | ||||    
T  16569532 gttgttttactaagttactagagtaataattaatattttaccgtttagtgaccgttggtgatattttaccgttatttgaccgttattagtgaattgccgt 16569631  T
Q  114 tgtgggtgtagaaac 128  Q
    |||| ||||||||||    
T  16569632 tgtgtgtgtagaaac 16569646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 16596130 - 16596016
Alignment:
Q  15 gttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||||||| | ||||    
T  16596130 gttgttttactaagttactagagtaataattaatattttaccgtttagtgaccgttggtgatattttaccgttatttgaccgttattagtgaattgccgt 16596031  T
Q  114 tgtgggtgtagaaac 128  Q
    |||| ||||||||||    
T  16596030 tgtgtgtgtagaaac 16596016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 12247646 - 12247764
Alignment:
Q  15 gttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgt 113  Q
    |||||||| ||||||||||||||||  |||||| ||||||| |||||||||| ||| || || |||||||||||||||||||||||||||| | ||||||    
T  12247646 gttgttttactaagttactagagtagtaattaatattttaccgtttagtgactgttggtaatattttaccgttaattgaccgttattagtg-attaccgt 12247744  T
Q  114 tgtgggtgtagaaacctttt 133  Q
    |||| |||||||||| ||||    
T  12247745 tgtgtgtgtagaaacatttt 12247764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 110803 - 110887
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  |||||||||||    
T  110803 ttagtaagaatagttgttttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgtta 110887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 45451772 - 45451922
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaagggga 190  Q
    ||||||||||||||| |||||||||| || ||||||| |||| ||  |||| |||||| |||||||||||||| || ||  ||||||||| |||||||||    
T  45451772 accgttattagtgaattaccgttgtgtgtatagaaacatttttgaattgaatagaaatgggttaagtccattaagtggacagttaggccctttaagggga 45451871  T
Q  191 cttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatttca 242  Q
    ||||||        | || |||||| ||||||||||||||||||||||||||    
T  45451872 cttgatataaaaacc-tagtcttatgagaaatttcctcacactttcatttca 45451922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 35095539 - 35095366
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| |||||||   |||| ||||||| ||||||||||| ||||||||||| |||||||||| |||  |||  ||||||||||| |||| ||||||||    
T  35095539 attagtgagaatagcaattttactaagttgctagagtaaaactaagattttaccgtttagtgaccgttaatgacattttaccgttacttgatcgttatta 35095440  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| ||||| |       |||||||  ||||| | |||| |||||| ||||||||||||||  ||||||||||||||||    
T  35095439 gtgaattaccggt-------tagaaacatttttggtttgaatagaaatgggttaagtccattaaattgagggttaggccca 35095366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 144343 - 144191
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| |||||||||||||||||||||||||||||   |||||||||| ||| ||||| |||||||           |||||||||||| ||||| |    
T  144343 gttgttttactaagttactagagtaaaattaagatttttgcgtttagtgaccgttagtgatattttacc-----------gttattagtgaattaccggt 144255  T
Q  115 gtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttagg 177  Q
      | |||||||||| |||  |||||||| |||||| ||||||||||||||  ||||||||||||    
T  144254 tagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaatttgagggttagg 144191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 7283590 - 7283761
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||| ||| ||||||||||| |||||||||| ||| ||||  ||||           ||||||||||    
T  7283590 attagtgagaatagttattttactaagttactagagt-aaactaagattttaccgtttagtgaccgttagtgacatttt-----------accgttatta 7283677  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaag-aaattggttaagtccattaggttgagggttaggcccatta 184  Q
    || || |||| || || |||||||||| ||||| | |||| || |||| ||||||||||||||||||  |||||||||||||||    
T  7283678 gttaattacctttttgagtgtagaaacattttggtttgaatagaaaatgggttaagtccattaggttttgggttaggcccatta 7283761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 13862479 - 13862551
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||||| |||||||||||||||||| |||||||||||| |||||||||| ||| ||||  |||||||||||    
T  13862479 gttgttttactaagttactagagtaaagttaagattttaccgtttagtgaccgttagtgacattttaccgtta 13862551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 26069135 - 26069218
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||| ||| ||||| || ||||||||    
T  26069135 ttagtgagaatagttgttttactaagt-actagagtaaaattaagattttaccgtttggtgaccgttagtgatattctaccgtta 26069218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 26069793 - 26069876
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||| ||| ||||| || ||||||||    
T  26069793 ttagtgagaatagttgttttactaagt-actagagtaaaattaagattttaccgtttggtgaccgttagtgatattctaccgtta 26069876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 26093580 - 26093663
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||| ||| ||||| || ||||||||    
T  26093580 ttagtgagaatagttgttttactaagt-actagagtaaaattaagattttaccgtttggtgaccgttagtgatattctaccgtta 26093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 2029639 - 2029554
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||| ||||| |||||||||||| |||| |||||||||| ||| ||||  |||||||||||    
T  2029639 attagtgagaatagttattttactaagttcctagaataaaattaagatcttaccgtttagtgaccgttagtgacattttaccgtta 2029554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 39046233 - 39046325
Alignment:
Q  89 ttgaccgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||||||||||||| ||||||||||  | |||||||||  ||||| | |||| || | | ||||||||||||||  ||||||||||||||||    
T  39046233 ttgaccgttattagttaaataccgtttggagtgtagaaatattttggtttgaatagcagtgggttaagtccattaaattgagggttaggccca 39046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 14419847 - 14419910
Alignment:
Q  122 tagaaaccttttgatgtgaaaaga-aattggttaagtccattaggttgagggttaggcccatta 184  Q
    ||||||| |||||||||||| ||| ||| ||||||||||||||||||  |||||||||||||||    
T  14419847 tagaaacattttgatgtgaatagagaatgggttaagtccattaggttttgggttaggcccatta 14419910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25124850 - 25124765
Alignment:
Q  1 aattagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  25124850 aattagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 25124765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 127136 - 127052
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  127136 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 127052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 1936554 - 1936638
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  1936554 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 1936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 12369559 - 12369600
Alignment:
Q  207 tactcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  12369559 tactcttatgagaaatttcctcacattttcatttcataagat 12369600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 16212470 - 16212390
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttacc 83  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||||||| ||||  |||||||    
T  16212470 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgacagttagtgacattttacc 16212390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 16569729 - 16569767
Alignment:
Q  210 tcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||| | |||||||||||||||||||||||||||||||    
T  16569729 tcttagaggaaatttcctcacactttcatttcataagat 16569767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 16595925 - 16595895
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  16595925 gaaatttcctcacactttcatttcataagat 16595895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 110881 - 110974
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaag-aaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||||||| || |||| || || |||||||||| ||||| | |||| || |||| ||| |||||||||| |||  |||||||||||||||    
T  110881 accgttattagttaattacctttttgagtgtagaaacattttggtttgaatagaaaatgggtcaagtccattatgttttgggttaggcccatta 110974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 32493579 - 32493663
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||||||| || || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  32493579 attagtgagaatagttatttcattaagttactagagtgaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 32493663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 20712806 - 20712561
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| ||||||| ||||||    
T  20712806 ttagtaagaatagttgttttactaagttactaaagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgctattag 20712707  T
Q  103 tgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    | || ||||| |  | |||||||||| |||  |||||||| |||||| |||||||||||||| || |||||||||||| | ||||| ||||| |          
T  20712706 ttaattaccggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaagtggagggttaggccaaataaggagactt-agtctaa 20712608  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
       | ||| ||||| ||||||||||||||||||||||||||||||||    
T  20712607 aaacctacacttatgagaaatttcctcacactttcatttcataagat 20712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 11336698 - 11336892
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| |||||||||| |||||| ||||||| |||||| ||| |||||| ||| ||    |||||||||| |||||||||||||    
T  11336698 attagtgagaaccgttgttttactaagttacttgagtaataattaaggttttaccgttaagtgactgttggtaggattttaccgtttattgaccgttatt 11336797  T
Q  101 agtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
     ||||| |||||||||| | |||||||| |||| |||||||   ||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  11336798 ggtgaattaccgttgtgtgggtagaaacattttagatgtgagttgaaatgggttaaatccattaagttgagggttaggcccattaaggggacttg 11336892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 21397807 - 21397631
Alignment:
Q  17 tgttttcctaagttactagagtaaaatt-aagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    |||||| ||||||||||||||||| ||| ||| |||||| ||||||||||  || | ||| ||||||||||| |||||||||||||||||| |||||||     
T  21397807 tgttttactaagttactagagtaatatttaaggttttaccgtttagtgaccattggcgatattttaccgtta-ttgaccgttattagtgaattaccgtta 21397709  T
Q  116 tgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
     | |||||||||| |||  ||| |||| |||||| |||||||||||||| || |||||||||||||||||||| |||||    
T  21397708 -gagtgtagaaacatttgagatctgaatagaaatgggttaagtccattaagtggagggttaggcccattaaggagactt 21397631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 21646268 - 21646352
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtt 86  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  21646268 attagtgagaatagttattttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgatattttaccgtt 21646352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 21907426 - 21907266
Alignment:
Q  28 gttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaa 126  Q
    |||| |||||||| |||| | |||||||  ||||||||  ||| ||||||||||||||||| | |||||||||||||||| |||||||||| | ||||||    
T  21907426 gttagtagagtaataattgatattttaccatttagtgatcgttggtgatgttttaccgttattcgaccgttattagtgaattaccgttgtgtgggtagaa 21907327  T
Q  127 ac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaag 186  Q
    ||  ||||||| |||| |||||| | |||||||||||| || ||| |||||| ||||||||    
T  21907326 acatttttgatttgaatagaaatggtttaagtccattaagtggagagttaggtccattaag 21907266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 28262164 - 28262071
Alignment:
Q  19 ttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccg 112  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||  ||||||||||| ||||||||||||||| || |||||    
T  28262164 ttttactaagttactagagtaaaattaagattttaccgtttcgtgaccgttagtgacattttaccgttacttgaccgttattagttaattaccg 28262071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 24182674 - 24182844
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| ||||||| |||||| |||||||| | ||| ||||| ||||||||||| ||| |||||||||||||| |||||||||| ||||||     
T  24182674 agttactagagtaataattaaggttttaccgtttagtggctgttggtgatattttaccgtta-ttggccgttattagtgaactaccgttgtgtgtgtagg 24182772  T
Q  126 aaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgat 196  Q
    | | ||||    |||   ||||| |||||| |||||| |  ||||| |||||||||||||||||||||||||    
T  24182773 agcattttagaatgagttgaaatgggttaaatccattaaatttgagagttaggcccattaaggggacttgat 24182844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 27182109 - 27182194
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||  ||||||||| ||| ||||  |||||||||||    
T  27182109 attagtgagaatagttattttactaagttactagagtaaaatttagattttaccttttagtgaccgttagtgacattttaccgtta 27182194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 22662271 - 22662382
Alignment:
Q  79 ttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttagg 177  Q
    |||||||||| ||||||||||| || |  |||||||  | |||||||||| |||| ||| |||| |||||| |||||||||||||| ||| |||||||||    
T  22662271 ttaccgttaagtgaccgttattggtaatttaccgtttagagtgtagaaacatttttgatttgaatagaaatgggttaagtccattaagtttagggttagg 22662370  T
Q  178 cccattaagggg 189  Q
    |||||| |||||    
T  22662371 cccatttagggg 22662382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 11584764 - 11584686
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||| |||| |||||||||||||||||| || | ||||||| |||||||||| ||||||||  |||||||||||    
T  11584764 agaatagttattttactaagttactagagtaaagttgacattttaccgtttagtgaccgtttgtgacattttaccgtta 11584686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 23981044 - 23981116
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtga 74  Q
    |||||| ||||||||| |||| |||||||||||||||||| || ||||||||| |||||||||| ||| ||||    
T  23981044 attagtgagaatagttattttgctaagttactagagtaaagttgagattttaccgtttagtgaccgttagtga 23981116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 4865963 - 4865900
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgac 65  Q
    |||||| | ||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  4865963 attagtgaaaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgac 4865900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1167748 - 1167801
Alignment:
Q  1 aattagtaagaatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  1167748 aattagtgagaatagttattttactaagttactagagtaaaactaagattttac 1167801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 1167796 - 1167907
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    ||||||| ||| ||||||||||||||| || ||||| |  | |||||||||| |||| | | |||| |||||| |||||||||||||| || ||||||||    
T  1167796 ttttaccattacttgaccgttattagttaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagtggagggtta 1167895  T
Q  176 ggcccattaagg 187  Q
     ||||| |||||    
T  1167896 agcccaataagg 1167907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 21907280 - 21907190
Alignment:
Q  151 gttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttcctcacactttcatttca 242  Q
    |||| |||||||| || ||| |||||||||||||||||||||||||        | || |||||| ||||||||||||||||||||||||||    
T  21907280 gttaggtccattaagtggagagttaggcccattaaggggacttgatataaaaacc-tagtcttatgagaaatttcctcacactttcatttca 21907190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 23467151 - 23467041
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| |||||||||||| |||| |||||  ||||||| |||  ||||| |||  |||| |||||||||||| |||||||||||||| |  |||||||| |    
T  23467151 ttttgctaagttactagggtaataattagtattttaccgttatgtgaccgttgttgatattttaccgttaactgaccgttattagtaatttaccgttgag 23467052  T
Q  118 ggtgtagaaac 128  Q
     ||||||||||    
T  23467051 tgtgtagaaac 23467041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 21205637 - 21205552
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||||||||||| ||||||||||| |||| || || ||| ||||  |||||||||||    
T  21205637 attagtgagaatagttatttcattaagttactagagtaaaactaagattttaccgtttggtaaccgttagtgacattttaccgtta 21205552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 11211699 - 11211794
Alignment:
Q  92 accgttattagtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggg 188  Q
    |||||||||||| ||||  ||||   ||| ||||||| ||||||| |  | |||||| ||||||||||||||||||  |||||||||||||||||||    
T  11211699 accgttattagttaaatggcgttagaggtatagaaacattttgatatagatagaaatgggttaagtccattaggtt-tgggttaggcccattaaggg 11211794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 21651411 - 21651327
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||  ||| ||||  |||||||||||    
T  21651411 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgatcgttagtgacattttaccgtta 21651327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11240 - 11418
Alignment:
Q  19 ttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgt 116  Q
    |||| |||||| |||||||||||  |||| |||||||| |||||||||| ||| ||||  ||||||||||| ||||||||||||||||||||||||||||    
T  11240 ttttactaagtcactagagtaaataattaggattttaccgtttagtgaccgttggtgacattttaccgtta-ttgaccgttattagtgaaataccgttgt 11338  T
Q  117 gggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    ||| |||||||| ||||| | |||| |||||| |||||||||||||| || | | |||||||||||||||||||||||||    
T  11339 gggcgtagaaacattttggtttgaatagaaatgggttaagtccattaagtggtgagttaggcccattaaggggacttgat 11418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 71322 - 71167
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  71322 agttactagagtaataattagtattttaccgtttagtgaccgttggtgatattttaccgttaattgaccgttattagtgaattaccgttgtgtgtgtaga 71223  T
Q  126 aac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccc 180  Q
    |||  ||||||| |||| |||||| ||||| |||||||| ||||||||||||||||    
T  71222 aacatttttgatttgaatagaaatgggttacgtccattaagttgagggttaggccc 71167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 108979 - 109160
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  ||| |||| ||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  108979 attagtgagaaccgtttttttactaagttactagagtaataattaaggttttatcgtttagtgacagttggtgatattttaccgtta-ttgaccgttatt 109077  T
Q  101 agtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    |||||| ||| |||||| | |||||||| ||||||| |||| |||||| |||||||||||||| |||||| ||||| ||||||    
T  109078 agtgaattactgttgtgtgggtagaaacattttgatttgaatagaaatgggttaagtccattaagttgagagttagacccatt 109160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 117480 - 117661
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  ||| |||| ||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  117480 attagtgagaaccgtttttttactaagttactagagtaataattaaggttttatcgtttagtgacagttggtgatattttaccgtta-ttgaccgttatt 117578  T
Q  101 agtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    |||||| ||| |||||| | |||||||| ||||||| |||| |||||| |||||||||||||| |||||| ||||| ||||||    
T  117579 agtgaattactgttgtgtgggtagaaacattttgatttgaatagaaatgggttaagtccattaagttgagagttagacccatt 117661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 131766 - 131944
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||  ||||  ||||||||||| || ||||||||||    
T  131766 attagtgagaaccgttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgtcggtgacattttaccgttatttaaccgttatta 131865  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    |||||||||||||||  |||||||||| |||  ||  |||| |||||| |||||||||||| ||||||||| |||||||    
T  131866 gtgaaataccgttgtatgtgtagaaacatttgcgagttgaatagaaatgggttaagtccatgaggttgaggattaggcc 131944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 12711 - 12655
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||||||| ||||||||||||  |||||||||| |||||||||| ||||    
T  12711 ttttaccgttaattgatcgttattagtgatttaccgttgtgtgtgtagaaacatttt 12655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 16558 - 16502
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||||||| ||||||||||||  |||||||||| |||||||||| ||||    
T  16558 ttttaccgttaattgatcgttattagtgatttaccgttgtgtgtgtagaaacatttt 16502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 26089 - 26033
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||||||| ||||||||||||  |||||||||| |||||||||| ||||    
T  26089 ttttaccgttaattgatcgttattagtgatttaccgttgtgtgtgtagaaacatttt 26033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 6376 - 6557
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| ||||| || |||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||| |    
T  6376 gttgttttactaaggtattagagtaaaattaagattttaccgtttagtgaccgttagtgatattttaccgttacttgaccgttattagtgaattaccggt 6475  T
Q  115 gtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttga 195  Q
      | ||||||||||  ||||| | |||  |||||| |||||||||||||| || ||||||||||| |||||||| |||||||    
T  6476 tagagtgtagaaacatttttggtttgactagaaatgggttaagtccattatgtggagggttaggcacattaaggagacttga 6557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 364 - 520
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||            | ||||||||||||||||||  ||   |    
T  364 gttgttttaccaagttactagagtaaaattaagattttactgtttagtgaccgttagtga-----------catttgaccgttattagtgaatcactact 452  T
Q  115 gtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
      | |||||||||| |||  |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  453 tggagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaggttgagggttaggccca 520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 24241 - 24481
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||| ||| ||||||||||||||||||||||||||| ||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  24241 attagtgagaaccgttggtttactaagttactagagtaaaattaagattctaccgtttagtgaccgttcgtgacattttaccgttacttgaccgttatta 24340  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnn 200  Q
    || || ||||| |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| || |||||||||||||| ||||| ||||| |         
T  24341 gttaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt-agtata 24439  T
Q  201 nnnncgtactcttataagaaatttcctcacactttcatttca 242  Q
        | ||||||||| ||||||||||||||||||||||||||    
T  24440 aaaacctactcttatgagaaatttcctcacactttcatttca 24481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 17367550 - 17367305
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||||||||||| ||||||||| || || ||||||||||||||| |||||||||| ||| ||||  ||||||||||| ||||||||||| ||    
T  17367550 ttagtgagaatagttgttttactaagttaccagcgtgaaattaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttataag 17367451  T
Q  103 tgaaataccgttgtgggtgtagaaacctttt--gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnn 200  Q
    |||| |||| ||  | |||||||||| ||||  ||||| || |||||| |||||||||||||  || |||||||||||||||||||| |||||| |        
T  17367450 tgaattaccatt-agagtgtagaaacattttgagatgtaaatagaaatgggttaagtccattgagtggagggttaggcccattaaggagacttggtataa 17367352  T
Q  201 nnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
        | ||| ||||| ||||||||||||||||||||| | ||||||||    
T  17367351 aaacc-tacacttatgagaaatttcctcacactttcactccataagat 17367305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 23836226 - 23836408
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||| ||| ||||  ||||||||||| |||||||||||||    
T  23836226 attagtgagaatagttgttttgctaagttactagagtaaaactaagattttaccgtttaatgaccgttagtgacattttaccgttatttgaccgttatta 23836325  T
Q  102 gtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatt 183  Q
    ||||| | ||| |  | ||||||||||  ||||| | |||| |||||| |||||||||||||| || | ||||||||||||||    
T  23836326 gtgaattgccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagtggggggttaggcccatt 23836408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 36890200 - 36890445
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| | |  |||| || |||||||| ||||||||||||||    
T  36890200 ttagtgagaataattgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgataatgatattctaccgttatttgaccgttattag 36890299  T
Q  103 tgaaataccgttgtgggtgtagaaa-ccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnn 201  Q
    |||  |||| ||  | |||||||||   ||||  | |||| ||||||  ||||||||||||| ||||||||||||||||||| | ||||||| |          
T  36890300 tgatttaccatttggagtgtagaaatattttttgtttgaatagaaatgagttaagtccattaagttgagggttaggcccatttatgggactt-actacaa 36890398  T
Q  202 nnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
       | || |||||| ||||||||||||||||||||||||||||||||    
T  36890399 aaacctagtcttatgagaaatttcctcacactttcatttcataagat 36890445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 42535339 - 42535149
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| |||||||||||||||||| | |||||||||| |||||||||| ||| ||||  ||||||||||| |||||| ||||||    
T  42535339 attagtgagaatagttattttactaagttactagagtaaact-aagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccattatta 42535241  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggact 192  Q
    ||||| ||||| |  | |||||||||| |||  |||||||||||||||  |||||||| |||| || ||||||||| |||| ||||| ||||    
T  42535240 gtgaattaccggttagagtgtagaaacttttgagatgtgaaaagaaatgagttaagtctattaagtggagggttagacccaataaggagact 42535149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 27262513 - 27262291
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| |||| | ||||||| |||||||||| |||  |||||||||| |||||||||||||||| |||||||| ||||||||| |||||||    
T  27262513 agttactagagtaataattgatattttaccgtttagtgaccgttgatgatgttttatcgttaattgaccgttaatagtgaaacaccgttgtgtgtgtaga 27262414  T
Q  126 aacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatt 223  Q
    ||| |||| ||| |||   ||||| |||||| |||||| || ||||| ||||||||||||||||||||||| |        | |  ||||| | ||||||    
T  27262413 aacattttagat-tgagttgaaatgggttaaatccattaagtttgagagttaggcccattaaggggacttgctataaaaacc-ttgtcttagaggaaatt 27262316  T
Q  224 tcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||    
T  27262315 tcctcacactttcatttcataagat 27262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 25875464 - 25875620
Alignment:
Q  15 gttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgtt 114  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||           |||||||||||| |||    
T  25875464 gttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgacattttaccgtta-----------ttagtgaaatactgtt 25875552  T
Q  115 gtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||  |||||||||| ||| |||  |||| |||||| ||||||||||||||||||||||||||||||||    
T  25875553 gtatgtgtagaaacatttgtgagttgaatagaaatgggttaagtccattaggttgagggttaggccca 25875620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 25602762 - 25602634
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttat 99  Q
    |||||| ||||  |||||||| ||||||||||||||||||  |||||| |||||| |||||||||| ||| ||||  ||||||||||| |||||||||||    
T  25602762 attagtgagaaccgttgttttactaagttactagagtaaataattaaggttttaccgtttagtgaccgttggtgacattttaccgttatttgaccgttat 25602663  T
Q  100 tagtgaaataccgttgtgggtgtagaaac 128  Q
    ||||||  |||||||||| ||||||||||    
T  25602662 tagtgatttaccgttgtgtgtgtagaaac 25602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 4447674 - 4447843
Alignment:
Q  27 agttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtaga 125  Q
    |||||||||||||| ||||||| ||||||  ||||||||  ||| || |||||||||||||| ||||||||||||||| || ||| |||||  |||||||    
T  4447674 agttactagagtaataattaaggttttaccatttagtgatcgttggtaatgttttaccgttatttgaccgttattagtaaattactgttgt--gtgtaga 4447771  T
Q  126 aaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgat 196  Q
    ||| ||||   ||||   |||||  ||||| |||||| || ||||| ||||||| |||||||||||||||||    
T  4447772 aacattttagagtgagttgaaatgagttaaatccattaagtttgagagttaggctcattaaggggacttgat 4447843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 19794263 - 19794348
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||  |||||||||| ||| ||||| |||||||||||    
T  19794263 attagtgagaatggttattttgctaagttactagagtaaaattgagattttatcgtttagtgaccgttagtgatattttaccgtta 19794348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 32466559 - 32466423
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtag 124  Q
    ||||||| |||||||||||| ||||||||| |||||||||| ||| ||||  | ||||||||| || ||||||||||||||| | ||| |  | ||||||    
T  32466559 taagttattagagtaaaattgagattttaccgtttagtgaccgttagtgacatcttaccgttatttaaccgttattagtgaattgccggttagagtgtag 32466460  T
Q  125 aaac-cttttgatgtgaaaagaaattggttaagtcca 160  Q
    ||||  ||||| | |||| |||||| |||||||||||    
T  32466459 aaacatttttggtttgaatagaaatgggttaagtcca 32466423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 28974767 - 28974588
Alignment:
Q  17 tgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    |||||| |||||||| |||||||| ||||||| ||| ||  || |||||  ||| ||  | |||||||||| ||||||||||||||||||| ||||||||    
T  28974767 tgttttactaagttattagagtaataattaaggtttcacccttaagtgatcgttggtagtattttaccgtttattgaccgttattagtgaattaccgttg 28974668  T
Q  116 tgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccat-taggttgagggttaggcccattaaggggactt 193  Q
    || |||||||||| |||| ||| ||||  | ||| |||||| |||||  || || |||||||||||||||  ||||||||    
T  28974667 tgtgtgtagaaacattttagatttgaattggaatgggttaaatccatgaagctttagggttaggcccatttgggggactt 28974588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 9652435 - 9652519
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||  |||||||||||||||||| || ||||||||| |||||||||||||| ||||  |||||||||||    
T  9652435 attagtgagaatagttatttcactaagttactagagtaaa-ttgagattttaccgtttagtgacagttagtgacattttaccgtta 9652519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 271820 - 271717
Alignment:
Q  81 accgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    ||||||| | |||||||||||||||| |||||||||| |  || |||  |||| ||  |||| |||||| |||||||||||||| |||||||||||||||    
T  271820 accgttattcgaccgttattagtgaattaccgttgtgtggataaaaatatttttgacttgaatagaaatgggttaagtccattaagttgagggttaggcc 271721  T
Q  180 catt 183  Q
    ||||    
T  271720 catt 271717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 24570882 - 24570997
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    |||||||||||| | |||||||||| | |  |||||||  | |||||||||| |||| ||| ||||  ||||| |||||||||||||| ||| |||||||    
T  24570882 ttttaccgttaagttaccgttattattaatttaccgtttagagtgtagaaacattttagatttgaatggaaataggttaagtccattaagtttagggtta 24570981  T
Q  176 ggcccattaaggggac 191  Q
    |||||||| |||||||    
T  24570982 ggcccatttaggggac 24570997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 15633908 - 15633846
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||| ||||   ||||||||||    
T  15633908 taagttattagagtaaaactaagattttactgtttagtgaccgttagtgacactttaccgtta 15633846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 22579451 - 22579507
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||| ||||||||||||||||  || ||||||| |||||||||| ||||    
T  22579451 ttttaccgttaagtgaccgttattagtgatttatcgttgtgtgtgtagaaacatttt 22579507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 22863628 - 22863542
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaat 89  Q
    |||||| || |||||| |||| ||||||||||||||| |||||  |||||||| ||||||| || ||| ||||  |||||||||||||    
T  22863628 attagtgaggatagttattttactaagttactagagt-aaattgggattttaccgtttagtaaccgttagtgacattttaccgttaat 22863542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 463398 - 463337
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  463398 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 463337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 20626907 - 20626968
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| ||||||||||| || ||||  |||||||||||    
T  20626907 taagttactagagtaaa-ttgagattttaccgtttagtgacaattagtgacattttaccgtta 20626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 23821335 - 23821445
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| |||||||||||| |||| |||||  ||||||| |||  ||||| |||   ||| |||||||||||| |||||||||||||| |  |||||||| |    
T  23821335 ttttgctaagttactagggtaataattagtattttaccgttatgtgactgttgtagatattttaccgttaagtgaccgttattagtaatttaccgttgag 23821434  T
Q  118 ggtgtagaaac 128  Q
     ||||||||||    
T  23821435 tgtgtagaaac 23821445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 23830414 - 23830524
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| |||||||||||| |||| |||||  ||||||| |||  ||||| |||   ||| |||||||||||| |||||||||||||| |  |||||||| |    
T  23830414 ttttgctaagttactagggtaataattagtattttaccgttatgtgactgttgtagatattttaccgttaagtgaccgttattagtaatttaccgttgag 23830513  T
Q  118 ggtgtagaaac 128  Q
     ||||||||||    
T  23830514 tgtgtagaaac 23830524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 25602542 - 25602512
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  25602542 gaaatttcctcacactttcatttcataagat 25602512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 8891909 - 8891825
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||| ||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  8891909 attagtgagaatagttatttcattaagttactagggtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 8891825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 164942 - 164765
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  164942 attagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgactgttagtgacattttaccgttacttgaccgttatta 164843  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    ||||| ||||| |    ||||||||| | |||||| |||| |||||| |||||||||||||| |||||||||||| ||||    
T  164842 gtgaattaccggttatagtgtagaaa-catttgat-tgaatagaaatgggttaagtccattaagttgagggttagaccca 164765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 165799 - 165882
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| ||||| |||  ||| ||||| |||||||||||    
T  165799 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttaatgatcgttagtgatattttaccgtta 165882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 41393 - 41145
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttat 99  Q
    |||||| ||||  |||||||| ||||||||||||||||||  |||||| |||||| |||||||||  ||| ||||  ||||||||||| |||||||||||    
T  41393 attagtgagaaccgttgttttactaagttactagagtaaataattaaggttttaccgtttagtgatcgttagtgacattttaccgttacttgaccgttat 41294  T
Q  100 tagtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnn 198  Q
     |||||| ||||| |  | ||||||||||  ||||| | |||| |||||| ||||||||||||   || |||||||||||||||||||| || |||||      
T  41293 cagtgaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccatggagtggagggttaggcccattaaggagatttgatgt 41194  T
Q  199 nnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
          | ||||||||| ||||||||||||||||||||||||||||||||    
T  41193 aaaaacc-tactcttatgagaaatttcctcacactttcatttcataagat 41145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 46900 - 46652
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttat 99  Q
    |||||| ||||  |||||||| ||||||||||||||||||  |||||| |||||| |||||||||| ||| ||||  ||||||||||| |||||||||||    
T  46900 attagtgagaaccgttgttttactaagttactagagtaaataattaaggttttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttat 46801  T
Q  100 tagtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnn 198  Q
     |||||| ||||| |  | ||||||||||  ||||| | |||| ||||||  |||||||||||   || |||||||||||||||||||| || |||||      
T  46800 cagtgaattaccggttagagtgtagaaacatttttggtttgaatagaaatgagttaagtccatggagtggagggttaggcccattaaggagatttgatgt 46701  T
Q  199 nnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
          | ||||||||| |||||||||||||||||| |||||||||||||    
T  46700 aaaaacc-tactcttatgagaaatttcctcacacttccatttcataagat 46652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 61523 - 61343
Alignment:
Q  18 gttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    ||||| ||||||||||||||||||  |||| ||||||||  |||| |||| ||| ||||| ||||||  ||| |||||||||||||||||||||||||||    
T  61523 gttttactaagttactagagtaaataattaggattttaccatttattgaccgttggtgatattttacactta-ttgaccgttattagtgaaataccgttg 61425  T
Q  116 tgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgat 196  Q
    ||||||||||||| ||||||| |||| |||||| ||||||||| ||| || ||||| |||| |||||||||||||| |||||    
T  61424 tgggtgtagaaacattttgatttgaatagaaataggttaagtctattaagtttgagagttatgcccattaaggggaattgat 61343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 79432 - 79582
Alignment:
Q  31 actagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacc 129  Q
    |||||||||| |||| | ||||||| | ||| |||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||     
T  79432 actagagtaataattgatattttaccggttaatgactgttggtgatgttttaccgttaattgaccgttatttgtgaaatagcgttgtgtgtctagaaaca 79531  T
Q  130 ttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcc 179  Q
    ||| |||| |||| |||||| |||||||||||||| |||||||||||||||    
T  79532 tttgtgatttgaatagaaatgggttaagtccattaagttgagggttaggcc 79582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 70167 - 70313
Alignment:
Q  31 actagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacc 129  Q
    |||||||||| |||| | ||||||| | |||||||| ||| |||||||||||  |||||||||||||||||||||||||| ||||||  ||||||||||     
T  70167 actagagtaataattgatattttaccggttagtgactgttggtgatgttttattgttaattgaccgttattagtgaaatatcgttgtttgtgtagaaaca 70266  T
Q  130 ttt-tgatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    ||| |||| |||| ||||||  ||||||||||||| |||||||||||    
T  70267 tttgtgatttgaatagaaatgagttaagtccattaagttgagggtta 70313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 70349 - 70385
Alignment:
Q  212 ttataagaaatttcctcacactttcatttcataagat 248  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  70349 ttatgagaaatttcctcacactttcacttcataagat 70385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1867 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1867
Description:

Target: scaffold1867; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 874 - 695
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| |||||| || |||| |||||||| |||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||| ||||||    
T  874 attagtgagaataattattttactaagttattagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccattatta 775  T
Q  102 gtgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    || || ||||| |  | |||||||||| |||| || | || |||||| |||||||||||||| |||||||||||||||||    
T  774 gttaattaccggttagagtgtagaaacatttttattttaatagaaatgggttaagtccattaagttgagggttaggccca 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 4999 - 4820
Alignment:
Q  16 ttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||  ||||||| ||| |||||||||||||||||| ||||| |     
T  4999 ttgttttactaagttactagagtaaaattaagattttaccgtttagtgaccgttagtgacattttacctttacttgaccgttattagtgaattaccggtt 4900  T
Q  116 tgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttg 194  Q
     | ||||||||||  ||||| | |||| |||||| | |||||||||||| || |||||||||||| | ||||| ||||||    
T  4899 agagtgtagaaacatttttggtttgaatagaaatggtttaagtccattaagtggagggttaggcctaataaggagacttg 4820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11099 - 11321
Alignment:
Q  18 gttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttg 115  Q
    ||||| ||||||||||||||||||  |||| ||||| || |||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||||||||||    
T  11099 gttttactaagttactagagtaaataattaggattt-accgtttagtgaccgttggtgatattttaccgtta-ttgaccattattagtgaaataccgttg 11196  T
Q  116 tgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactctta 214  Q
    ||||||||||||| ||| ||  |||| | |||| ||||||||||||| || ||||| ||||||||||||| || ||||| |         | ||||||||    
T  11197 tgggtgtagaaacatttcgaattgaatataaatgggttaagtccattaagtttgagagttaggcccattagggagactt-agtataaaaacttactctta 11295  T
Q  215 taagaaatttcctcacactttcattt 240  Q
    | ||||||||||||||||||||||||    
T  11296 tgagaaatttcctcacactttcattt 11321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 15570 - 15400
Alignment:
Q  24 ctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgta 123  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| | |||||||||||||||| ||||| |  | |||||    
T  15570 ctaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttactagaccgttattagtgaattaccggttagagtgta 15471  T
Q  124 gaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    || || |||  |||||||| ||||||  ||||||||||||| || |||||||||||||| ||||| |||||    
T  15470 gagacatttgagatgtgaatagaaatgagttaagtccattaagtggagggttaggcccaataaggagactt 15400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 10657 - 10474
Alignment:
Q  15 gttgttttcctaagttactagagtaaa--attaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccg 112  Q
    |||||||| ||||||||||||||||||  |||||  |||||| |||||||||| ||| ||||| |||||| |||| ||||||||||||| |||| |||||    
T  10657 gttgttttactaagttactagagtaaataattaaagttttaccgtttagtgactgttagtgatattttactgttagttgaccgttattactgaattaccg 10558  T
Q  113 ttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgat 196  Q
    ||||| |||||||||| |||| ||| |||    |||| |||||| ||||||| |||||| |||||||||||||| ||||||||||    
T  10557 ttgtgtgtgtagaaacattttagat-tgagttcaaatgggttaaatccattaagttgagagttaggcccattaaagggacttgat 10474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 39034 - 38841
Alignment:
Q  1 aattagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||  ||||||||||| ||||||||||||    
T  39034 aattagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttggtgaccgttagtgacattttaccgttatttgaccgttatt 38935  T
Q  101 agtgaaataccgttgtgggtgtagaaac-cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    | |||| ||||| |  | ||||||||||  ||||| | |||| ||||||  |||| |||||||| || ||||| |||||||| ||||| |||||    
T  38934 aatgaattaccggttagagtgtagaaacatttttggtttgaatagaaatcagttacgtccattaagtggagggctaggcccaataaggagactt 38841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0816 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0816
Description:

Target: scaffold0816; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 2581 - 2761
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||||||||||| |||||||||||||    
T  2581 attagtgagaaccgttgttttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgttacttgaccgttatta 2680  T
Q  102 gtgaaataccgttgtgggtgtagaaa-ccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggccca 181  Q
    |  || ||||| |  | |||||||||   ||||| | ||||  ||||| |||||||||||||| |||||||||||||||||    
T  2681 gcaaattaccggttagagtgtagaaatttttttggtttgaatggaaatgggttaagtccattaagttgagggttaggccca 2761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 5282 - 5046
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaat 108  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |||| ||| ||||  |||||  |||| |||| |||||||||| || |    
T  5282 agaatagttattttactaagttactagagtaaaactaagattttaccgtt-attgaccgttagtgacattttattgttacttgatcgttattagttaa-t 5185  T
Q  109 accgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgta 208  Q
    ||||||||  |||||||||| |||||||||||| ||||||  ||||||||||||| ||  |||||| |||||| ||||  ||||| |         | ||    
T  5184 accgttgtatgtgtagaaacattttgatgtgaatagaaatgtgttaagtccattaagtgaagggtttggcccaataagaagactt-agtataaaaaccta 5086  T
Q  209 ctcttataagaaatttcctcacactttcatttcataagat 248  Q
    | ||||| ||||||||||||||||||||||||||||||||    
T  5085 cacttatgagaaatttcctcacactttcatttcataagat 5046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 9896 - 9660
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaat 108  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |||| ||| ||||  |||||  |||| |||| |||||||||| || |    
T  9896 agaatagttattttactaagttactagagtaaaactaagattttaccgtt-attgaccgttagtgacattttattgttacttgatcgttattagttaa-t 9799  T
Q  109 accgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgta 208  Q
    ||||||||  |||||||||| |||||||||||| ||||||  ||||||||||||| ||  |||||| |||||| ||||  ||||| |         | ||    
T  9798 accgttgtatgtgtagaaacattttgatgtgaatagaaatgtgttaagtccattaagtgaagggtttggcccaataagaagactt-agtataaaaaccta 9700  T
Q  209 ctcttataagaaatttcctcacactttcatttcataagat 248  Q
    | ||||| ||||||||||||||||||||||||||||||||    
T  9699 cacttatgagaaatttcctcacactttcatttcataagat 9660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 7891 - 7655
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaat 108  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| ||| | |||| ||| ||||  |||||  |||| |||| |||||||||| || |    
T  7891 agaatagttattttactaagttactagagtaaaactaagattttaccgtt-attgaccgttagtgacattttattgttacttgatcgttattagttaa-t 7794  T
Q  109 accgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgta 208  Q
    ||||||||  |||||||||| |||||||||||| ||||||  ||||||||||||| ||  |||||| |||||| ||||  ||||| |         | ||    
T  7793 accgttgtatgtgtagaaacattttgatgtgaatagaaatgtgttaagtccattaagtgaagggtttggcccaataagaagactt-agtataaaaaccta 7695  T
Q  209 ctcttataagaaatttcctcacactttcatttcataagat 248  Q
    | ||||| ||||||||||||||||||||||||||||||||    
T  7694 cacttatgagaaatttcctcacactttcatttcataagat 7655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 9720 - 9473
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||| || || ||||||||||| || || ||||||    
T  9720 attagtgagaaccgttgttttactaagttactagagtaataattaaggttttaccgtttagtgaccgttggtaatattttaccgttatttcactgttatt 9621  T
Q  101 agtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggacttgatnn 198  Q
    |||| | ||  |||||| |||||||||| |||| ||| |||   ||||| |||||| |||||| || || |  ||||||||||||||||||||||| |      
T  9620 agtg-attattgttgtgtgtgtagaaacattttagatttgagttgaaatgggttaaatccattaagctttatagttaggcccattaaggggacttgctat 9522  T
Q  199 nnnnnncgtactcttataagaaatttcctcacactttcatttcataagat 248  Q
          | || ||||| | |||||||||||||||||||||||||||||||    
T  9521 aaaaacctta-tcttagaggaaatttcctcacactttcatttcataagat 9473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 14999 - 15083
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  |||||||||||    
T  14999 ttagtaagaatagttgttttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacattttaccgtta 15083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 36480 - 36563
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||| |||||||||||||||||| || ||||||||| |||||||||| ||| ||||| |||||||||||    
T  36480 ttagtgagaatagttattttactaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgatattttaccgtta 36563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 112059 - 112191
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatt 100  Q
    |||||| ||||  |||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||| |  || ||||||||||| ||||||||||||    
T  112059 attagtgagaactgttgttttactaagttactagagtaataattaaggttttaccgtttagtgaccgttggaaatattttaccgttatttgaccgttatt 112158  T
Q  101 agtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||| || ||| ||| |||||||||| ||||    
T  112159 agtgaattatcgtggtgtgtgtagaaacatttt 112191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 102534 - 102590
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||| |||||||||||||| |  |||||||||| |||||||||| ||||    
T  102534 ttttaccgttaagtgaccgttattagtaatttaccgttgtgtgtgtagaaacatttt 102590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 112269 - 112307
Alignment:
Q  210 tcttataagaaatttcctcacactttcatttcataagat 248  Q
    ||||| | |||||||||||||||||||||||||||||||    
T  112269 tcttagaggaaatttcctcacactttcatttcataagat 112307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 86019 - 85872
Alignment:
Q  48 attttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaa 146  Q
    ||||||| |||||||||| ||| ||||| ||||| |||||||| ||||||||||||||| |||||||||| |||||||||| |||| |||  ||   |||    
T  86019 attttaccgtttagtgactgttggtgatattttatcgttaattaaccgttattagtgaattaccgttgtgtgtgtagaaacattttagattggagttgaa 85920  T
Q  147 attggttaagtccatt-aggttgagggttaggcccattaaggggactt 193  Q
    ||  ||||| |||||| || ||||| ||||||||||||||||||||||    
T  85919 atgagttaaatccattaagtttgagagttaggcccattaaggggactt 85872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 160016 - 159843
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| ||||||||||||||||| |||||| ||||||| | | |||||| ||| ||  ||||||||||||| |||||||||||| ||||  |||||||||     
T  160016 ttttgctaagttactagagtaataattaatattttaccgataagtgaccgttggtagtgttttaccgttagttgaccgttattggtgatttaccgttgt- 159918  T
Q  118 ggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccatt-aggttgagggttaggcccattaaggggac 191  Q
     |||||||||| ||||  || |||   | ||| |||||| |||||| || || |||||||||||||||||||||||    
T  159917 -gtgtagaaacattttaaatttgagttggaatgggttaaatccattaagctttagggttaggcccattaaggggac 159843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 5207 - 5431
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattag 102  Q
    ||||| ||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||| |||  |||  ||||           |||||||||||    
T  5207 ttagtgagaattgttgttttactaagttattagagtaaaattaagattttaccgtttagtgaccgttactgacatttt-----------accgttattag 5295  T
Q  103 tgaaataccgttgtgggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnn 202  Q
    || | |||   |  | |||||||||| ||| | | |||| |||||| ||||||||||||||  |||||||||||||||||||||| ||||||||          
T  5296 tggattactagttagtgtgtagaaacatttcggtttgaatagaaatgggttaagtccattaacttgagggttaggcccattaaggagacttgatataaaa 5395  T
Q  203 nncgtactcttataagaaatttcctcacactttcatt 239  Q
      | ||||||||| |||||||||||||||||||||||    
T  5396 acc-tactcttatgagaaatttcctcacactttcatt 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 4718 - 4803
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||||||||    
T  4718 attagtgagaatagttattttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgatattttaccgtta 4803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 254394 - 254493
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||| ||||||| || ||| ||||||    
T  254394 attagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacatttgaccgttacttaaccattatta 254493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 261000 - 261099
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| ||| ||||  ||| ||||||| || ||| ||||||    
T  261000 attagtgagaatagttattttactaagttactagagtaaaactaagattttaccgtttagtgaccgttagtgacatttgaccgttacttaaccattatta 261099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 122725 - 122810
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||| | |||| ||||||||||||||||||||| ||||||||| |||||||||| ||| ||||  |||||||||||    
T  122725 attagtgagaatagctattttactaagttactagagtaaaattgagattttaccgtttagtgaccgttagtgactttttaccgtta 122810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 19483 - 19568
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| |||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  19483 attagtgagaatagttattttactaagttactagagtaaagttgagattttaccgtttagtgaccgttagtgacattttaccgtta 19568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 4774 - 4957
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttatta 101  Q
    |||||| ||||  |||||||| ||||||||||||||||||| ||||||||||| |||||          ||||| ||||||||||| |||||||||||||    
T  4774 attagtgagaaccgttgttttactaagttactagagtaaaactaagattttaccgttta----------gtgatattttaccgttacttgaccgttatta 4863  T
Q  102 gtgaaataccgttgtgggtgtagaaac--cttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    ||||| ||    |  | ||||||||||   ||||| | |||| |||||| |||||||||||||| || |||||||||||| | ||||| |||||    
T  4864 gtgaattattagttagagtgtagaaacattttttggtttgaatagaaatgggttaagtccattaagtggagggttaggcctaataaggagactt 4957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 30809 - 30644
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaat 108  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||||| |||||||||| ||| ||||  ||||           || ||||||||| || |    
T  30809 agaatagttattttactaaattactagagtaaaattgagattttaccgtttagtgaccgttagtgacatttt-----------actgttattagttaatt 30721  T
Q  109 accgttgtgggtgtagaaaccttt-tgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||| |  | |||||||||| |||  |||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  30720 accggttagagtgtagaaacatttgagatgtgaatagaaatgggttaagtccattaggttttgggttaggcccatta 30644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 5935 - 6020
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| |||||||||||||||||| || ||||||| | |||||||||| ||| ||||  |||||||||||    
T  5935 attagtgagaatagttattttactaagttactagagtaaagttgagatttttcagtttagtgactgttagtgacattttaccgtta 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 6039 - 6105
Alignment:
Q  117 gggtgtagaaaccttttgatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||||||  ||  |||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  6039 gggtgtagaaattttgagatgtgaatagaaat-ggttaagtccattaggttttgggttaggcccatta 6105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 9002 - 8885
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt-gatgtgaaaagaaattggttaagtccattaggttgagggtta 175  Q
    ||||||| ||| ||||||||||||||| || ||||| |  | |||||||||| |||| | | |||| |||||| |||||||||||||| || ||||||||    
T  9002 ttttacctttacttgaccgttattagttaattaccggttagagtgtagaaacatttttggtttgaatagaaatgggttaagtccattaagtggagggtta 8903  T
Q  176 ggcccattaaggggactt 193  Q
    |||||| ||||| |||||    
T  8902 ggcccaataaggagactt 8885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 9049 - 8997
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||    
T  9049 attagtgagaatagttattttactaagttactagagtaaaattgagattttac 8997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 48855 - 48767
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaatt 90  Q
    |||||| ||||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||  |||  |||  ||||||||||||||    
T  48855 attagtgagaatagttattttactaagttactaaagtaaaactaagattttaccgtttagtgaacgttgctgacattttaccgttaatt 48767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 62303 - 62215
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaatt 90  Q
    |||||| ||||||||| |||| ||||||||||| ||||||| ||||||||||| |||||||||  |||  |||  ||||||||||||||    
T  62303 attagtgagaatagttattttactaagttactaaagtaaaactaagattttaccgtttagtgaacgttgctgacattttaccgttaatt 62215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 48736 - 48681
Alignment:
Q  138 tgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    |||| |||||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  48736 tgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt 48681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 62184 - 62129
Alignment:
Q  138 tgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggactt 193  Q
    |||| |||||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  62184 tgaatagaaatgggttaagtccattaagtggagggttaggcccaataaggagactt 62129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 12985 - 12870
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| ||||||||||||||||  |||||  |||||||  |||||||   ||| ||||| ||||||||||| |||||||||||||||||  | ||||||||    
T  12985 ttttgctaagttactagagtagtaattagtattttaccatttagtggtcgttggtgatattttaccgttatttgaccgttattagtgatttgccgttgtg 12886  T
Q  118 ggtgtagaaacctttt 133  Q
     |||||||||| ||||    
T  12885 tgtgtagaaacatttt 12870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 25985 - 26062
Alignment:
Q  10 gaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| || |||| ||||||||||| ||||||||| ||||||||| |||||||||| ||| ||||  |||||||||||    
T  25985 gaatatttattttactaagttactatagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgtta 26062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 7729 - 7812
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||| ||| ||||  ||| |||||||    
T  7729 ttagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaccgttagtgacatttcaccgtta 7812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 55684 - 55729
Alignment:
Q  9 agaatagttgttttcctaagttactagagtaaaattaagattttac 54  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  55684 agaatagttgttttactaagttactagagtaaaattgagattttac 55729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 20891 - 20806
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||| |||||||||| || |||||||||  ||||||||| ||| ||||  |||||||||||    
T  20891 attagtgagaatagttattttactaagttgctagagtaaagttgagattttaccatttagtgaccgttagtgacattttaccgtta 20806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 8169 - 8048
Alignment:
Q  134 gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccattaaggggacttgatnnnnnnnncgtactcttataagaaatttcctcacact 233  Q
    |||||||| |||||| |||||||||||||| || ||||||| || ||||||||| ||||||||        | ||| ||||| ||||||||||||| |||    
T  8169 gatgtgaatagaaatgggttaagtccattaagtggagggttgggtccattaaggagacttgatataaaaacc-tacacttatgagaaatttcctcatact 8071  T
Q  234 ttcatttcataagattttgttgga 257  Q
    |||| |||||||||| || |||||    
T  8070 ttca-ttcataagatatttttgga 8048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 21957 - 22072
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| ||||||||||||||||  |||||  ||||||| ||| ||||||  ||  |||| |||||||||||| |||||||||||||| |  |||||||| |    
T  21957 ttttactaagttactagagtagtaattagtattttaccgttaagtgaccattgttgatattttaccgttaagtgaccgttattagtaatttaccgttgag 22056  T
Q  118 ggtgtagaaacctttt 133  Q
     |||||||||| ||||    
T  22057 tgtgtagaaacatttt 22072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1539 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold1539
Description:

Target: scaffold1539; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 264 - 176
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaag---attttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||   ||||||| ||| |||||| ||| ||||  |||||||||||    
T  264 attagtgagaatagttattttactaagttactagagtaaaattgagataattttaccgttaagtgaccgttagtgacattttaccgtta 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1539; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 155 - 89
Alignment:
Q  119 gtgtagaaaccttttgatgtgaaaagaaattgg-ttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||||| ||||| | |||| ||||| ||| ||||||||||||||||  |||||||||||||||    
T  155 gtgtagaaacattttggtttgaatagaaaatgggttaagtccattaggttttgggttaggcccatta 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1164 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1164
Description:

Target: scaffold1164; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 2071 - 2013
Alignment:
Q  29 ttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||||||||||||| ||||||||| |||||||||| ||| ||||  |||||||||||    
T  2071 ttactagagtaaaattgagattttaccgtttagtgaccgttagtgacattttaccgtta 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 5425 - 5341
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  5425 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 5341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 15590 - 15507
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  15590 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 15507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 193032 - 193116
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  193032 attagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 193116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 9579 - 9496
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  9579 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttagtgactgttggtgacattttaccgtta 9496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 30813 - 30896
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtt 86  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||| ||| ||||  ||||||||||    
T  30813 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaccgttagtgacattttaccgtt 30896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 42031 - 41948
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtt 86  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||| ||| ||||  ||||||||||    
T  42031 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaccgttagtgacattttaccgtt 41948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 36743 - 36806
Alignment:
Q  122 tagaaaccttttgatgtgaaaaga-aattggttaagtccattaggttgagggttaggcccatta 184  Q
    ||||||| |||||||||||| ||| ||  ||||||||||||||||||  |||||||||||||||    
T  36743 tagaaacattttgatgtgaatagagaacgggttaagtccattaggttttgggttaggcccatta 36806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1295 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1295
Description:

Target: scaffold1295; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 822 - 707
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| |||||||||||| |||  |||||| ||||||| |||  |||||  ||  |||| |||||||||||| |||||||||||||| |  |||||||| |    
T  822 ttttgctaagttactagggtagtaattaatattttaccgttacgtgacccttgttgatattttaccgttaagtgaccgttattagtaatttaccgttgag 723  T
Q  118 ggtgtagaaacctttt 133  Q
     |||||||||| ||||    
T  722 tgtgtagaaacatttt 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 627 - 576
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagatttta 53  Q
    |||||| ||||||||| |||| |||||||||||||||||||  |||||||||    
T  627 attagtgagaatagttattttactaagttactagagtaaaaccaagatttta 576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 6387 - 6272
Alignment:
Q  19 ttttcctaagttactagagtaa-aattaagattttactgtttagtgacagtttgtgatgttttaccgttaattgaccgttattagtgaaataccgttgtg 117  Q
    |||| ||||||||||||||||  |||||  |||||||  || |||||| |||  |||| |||||||||||| |||||||||||||| |  |||| ||| |    
T  6387 ttttactaagttactagagtagtaattagtattttacctttaagtgaccgttgttgatattttaccgttaagtgaccgttattagtaatttaccattgag 6288  T
Q  118 ggtgtagaaacctttt 133  Q
     |||||||||| ||||    
T  6287 tgtgtagaaacatttt 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 247004 - 247090
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgttaat 89  Q
    |||||| || |||||| |||| ||||||||||||||| |||||  |||||||  |||||||||| ||| ||||  |||||||||||||    
T  247004 attagtgaggatagttattttactaagttactagagt-aaattgggattttatcgtttagtgaccgttagtgacattttaccgttaat 247090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0876 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0876
Description:

Target: scaffold0876; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 374 - 324
Alignment:
Q  134 gatgtgaaaagaaattggttaagtccattaggttgagggttaggcccatta 184  Q
    |||||||| |||||| ||||||||||||||||||  ||||||| |||||||    
T  374 gatgtgaatagaaatgggttaagtccattaggttttgggttagtcccatta 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 2431 - 2401
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  2431 gaaatttcctcacactttcatttcataagat 2401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 15575 - 15636
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  15575 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 15636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 6694 - 6633
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||||| | ||||  |||||||||||    
T  6694 taagttactagagtaaa-ttgagattttaccgtttagtgacaggtagtgacattttaccgtta 6633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 49090 - 49151
Alignment:
Q  25 taagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  49090 taagttactagagtaaa-ttgagattttaccgtttagtgaccgttagtgacattttaccgtta 49151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 34180 - 34150
Alignment:
Q  218 gaaatttcctcacactttcatttcataagat 248  Q
    |||||||||||||||||||||||||||||||    
T  34180 gaaatttcctcacactttcatttcataagat 34150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 9573 - 9657
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||| ||||||| || ||||||||| |||||||||| ||| ||| | |||||||||||    
T  9573 attagttagaatagttatttcattaagttacttgagtaaa-ttgagattttaccgtttagtgaccgttagtggtattttaccgtta 9657  T

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Target: scaffold0132 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 14215 - 14131
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||| ||| ||||  |||||| ||||    
T  14215 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaccgttagtgacattttactgtta 14131  T

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Target: scaffold0132; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 43071 - 42987
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    |||||| ||||||||| |||   ||||||||| ||||||| || ||||||||| |||||||||| ||| ||||  |||||||||||    
T  43071 attagtgagaatagttatttcattaagttacttgagtaaa-ttgagattttaccgtttagtgactgttagtgacattttaccgtta 42987  T

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Target: scaffold0389 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 11319 - 11263
Alignment:
Q  77 ttttaccgttaattgaccgttattagtgaaataccgttgtgggtgtagaaacctttt 133  Q
    |||||||||||| |||||||||||||| |  |||||||| | |||||||||| ||||    
T  11319 ttttaccgttaagtgaccgttattagtaatttaccgttgagcgtgtagaaacatttt 11263  T

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Target: scaffold0266 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 3145 - 3228
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   ||||||||||||||||| || ||||||||| ||||| |||| ||| ||||  |||||||||||    
T  3145 ttagtgagaatagttatttcattaagttactagagtaaa-ttgagattttaccgtttaatgaccgttagtgacattttaccgtta 3228  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 107350 - 107433
Alignment:
Q  3 ttagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgacagtttgtgatgttttaccgtta 87  Q
    ||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| ||||||| || ||| |||| |||||| |||||    
T  107350 ttagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtaactgttagtgacgttttatcgtta 107433  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 50748 - 50811
Alignment:
Q  2 attagtaagaatagttgttttcctaagttactagagtaaaattaagattttactgtttagtgaca 66  Q
    |||||| ||||||||| |||   |||||||||||||| ||||| ||||||||| |||||||||||    
T  50748 attagtgagaatagttatttcattaagttactagagt-aaattgagattttaccgtttagtgaca 50811  T

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