View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1477_high_25 (Length: 235)
Name: NF1477_high_25
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45148972 - 45149206
Alignment:
| Q |
1 |
ggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtcagaacgaagatattgctcaagctatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
45148972 |
ggcaagggaattgtttgaggcaatgccttgtcggaatgtaggttcatggaataccattatcagcggctatggtcagaacggagatattgctcaagctagg |
45149071 |
T |
|
| Q |
101 |
aaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggtcactatgaagaagttatggacatgc |
200 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
45149072 |
gaattgtttgacatgatgactcagcgcgattgtgtatcttgggcggcaattattgctggttatgctcagactggtcactatgaaaaagttatgcacatgc |
45149171 |
T |
|
| Q |
201 |
tggtgaagatgtaaaggg-cggcgaaagtttaaat |
234 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
45149172 |
tggtgaagatgaaaagggacggcaaaagtttaaat |
45149206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 45165334 - 45165520
Alignment:
| Q |
2 |
gcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtcagaacgaagatattgctcaagctatga |
101 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||||||| || ||||||||||||||||||| | ||||||||||||| | ||| |||||||| |||| | |
|
|
| T |
45165334 |
gcaagggagttgtttgagtctatgccctgtcggaatataagttcatggaataccatgattacaggctatggtcagattggagacattgctcaggctagaa |
45165433 |
T |
|
| Q |
102 |
aattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggtcactatgaagaag |
188 |
Q |
| |
|
|||| ||| | |||||| | ||| || ||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
45165434 |
aattctttgatatgatgccacagcgtgactgtgtatcttgggcggctattattgctggttatgctcagagcggtcactatgaagaag |
45165520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24134617 - 24134386
Alignment:
| Q |
1 |
ggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtcagaacgaagatattgctcaagctatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| | | |||||||||||| | |
|
|
| T |
24134617 |
ggcaagggaattgtttgaggcaatgccatgttggaatgtaggttcgtggaataccatgatcaacggctatgatcagaaaggaaatattgctcaagttggc |
24134518 |
T |
|
| Q |
101 |
aaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggtcactatgaagaagttatggacatgc |
200 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
24134517 |
aaattgtttgacatgatggctaaccgcgattgtgtatcttgggtggcaattattggtggttaggctcagactggtcattatgaagaagctatggacatgc |
24134418 |
T |
|
| Q |
201 |
tggtgaagatgtaaaggg-cggcgaaagttta |
231 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |
|
|
| T |
24134417 |
tggtgaagatgaaaagggatggcgaaagttta |
24134386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 24136926 - 24136696
Alignment:
| Q |
4 |
aagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtcagaacgaagatattgctcaagctatgaaa |
103 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24136926 |
aagggaattgtatgaggtaatgccttgtcagaatgtaggttcctggaa-accatgatcaacggctatggtcagaacgaagatattgctcaagctaggaaa |
24136828 |
T |
|
| Q |
104 |
ttgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggtcactatgaagaagttatggacatgctgg |
203 |
Q |
| |
|
|||||| ||||||||| || |||||||||| |||||||| |||||||||| |||||| ||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
24136827 |
ttgtttgacatgatggctcaacgcgattgtgcatcttgggaagcaattattgctggttaggctaagactggtcactatgaataagctatggacatgctgg |
24136728 |
T |
|
| Q |
204 |
tgaagatgtaaaggg-cggcgaaagtttaaat |
234 |
Q |
| |
|
|||||||| |||||| |||| ||| ||||||| |
|
|
| T |
24136727 |
tgaagatgaaaagggacggcaaaaatttaaat |
24136696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 24134238 - 24134149
Alignment:
| Q |
146 |
gcaattattgatggttatgctcagactggtcactatgaagaagttatggacatgctggtgaagatgtaaaggg-cggcgaaagtttaaat |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
24134238 |
gcaattattgatggttatgcacagactgatcactatgaagaagttatggacatgctggtgaagatgaaaagggacggcgaaagtgtaaat |
24134149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University