View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_high_29 (Length: 214)
Name: NF1477_high_29
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 1986247 - 1986069
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
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| T |
1986247 |
tttatttgaatagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgattt |
1986148 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatgatgttccaactctttctgtg |
199 |
Q |
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| T |
1986147 |
gggg-acagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatggtgttccaactctttctgtg |
1986069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 15572202 - 15572052
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
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|||||||||| | ||||| || ||||| || ||||| |||||| |||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| |
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| T |
15572202 |
tttatttgaacaatagtactaattggtttgcccgtcaacgatattattgtcatttgaagaatcttacgattgaacaatttgtgataatctcgcttgattt |
15572103 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaaga |
171 |
Q |
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| T |
15572102 |
gggg-acagaaacatatagacaatcgatgctacctcgatgttgtgatgaaga |
15572052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 13417209 - 13417060
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
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||||||| |||| |||||||| ||||| || ||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||| |||| || |
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| T |
13417209 |
tttatttcaataatagtattaattggtttgcccgtcaccgatataattgtcatttga------ttacaattgaacaatttgtgattatctcggttgagtt |
13417116 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctac |
176 |
Q |
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||||| | |||| |||||||||||||||||| ||||||| |||||| ||||| |||| |
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| T |
13417115 |
gggga-ctgagacatatacacagttgttgctacctcgatgttgtgaggaagagctac |
13417060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 14076475 - 14076618
Alignment:
| Q |
22 |
tatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgatttgg |
121 |
Q |
| |
|
||||||| || |||| | ||||||| || ||||| || |||| ||||||| ||| ||||| || |||| ||| |||||||||||||||||||||||| |
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| T |
14076475 |
tatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttgatttgg |
14076574 |
T |
|
| Q |
122 |
ggaacagagagatatacacagttgttgctccctcgatattgtgat |
166 |
Q |
| |
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|| || |||| ||||||||| ||||| ||||||| || ||||||| |
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|
| T |
14076575 |
gg-actgagacatatacacaattgttactccctccatgttgtgat |
14076618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 14386503 - 14386646
Alignment:
| Q |
22 |
tatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgatttgg |
121 |
Q |
| |
|
||||||| || |||| | ||||||| || ||||| || |||| ||||||| ||| ||||| || |||| ||| |||||||||||||||||||||||| |
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| T |
14386503 |
tatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttgatttgg |
14386602 |
T |
|
| Q |
122 |
ggaacagagagatatacacagttgttgctccctcgatattgtgat |
166 |
Q |
| |
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|| || |||| ||||||||| ||||| ||||||| || ||||||| |
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| T |
14386603 |
gg-actgagacatatacacaattgttactccctccatgttgtgat |
14386646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 18515045 - 18514945
Alignment:
| Q |
75 |
gaagaatcttacagttgaacaacttgtgattatctcacttgatttggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatct |
174 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| |||| ||||||||| || |||||| |||||||||||| ||||||||||||| |||| || |||| || |
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| T |
18515045 |
gaagaatcttaccattgaacaatatgttattgtctcgcttgatttgaaga-cagagacatatacacagttcttgctccctcgatcttgtaataaagagct |
18514947 |
T |
|
| Q |
175 |
ac |
176 |
Q |
| |
|
|| |
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|
| T |
18514946 |
ac |
18514945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 6948172 - 6947994
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
6948172 |
tttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtgatgatctcacttgattt |
6948073 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatgatgttccaactctttctgtg |
199 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
6948072 |
gggg-acagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgtg |
6947994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 6943246 - 6943081
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |
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|
| T |
6943246 |
tttatttgaaaagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgattt |
6943147 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatgatgttcc |
186 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||| || |||||||||||| ||||||||| |||| |
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|
| T |
6943146 |
gggg-acagagacatatacaaaattgttgctccctcaatgttgtgatgaagagctacatgattttcc |
6943081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 6921642 - 6921465
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||| |
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|
| T |
6921642 |
tttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtgatgatctcacttgattt |
6921543 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatgatgttccaactctttctgt |
198 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
6921542 |
gggga-cagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgt |
6921465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 6935510 - 6935334
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||| |
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|
| T |
6935510 |
tttatttgaaaagtagtattagttggtgtgttcgttaccgatataattgtcatttgaagaatcttacagtcgaacaattcgtgatgatctcacttgattt |
6935411 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatgatgttccaactctttctg |
197 |
Q |
| |
|
|||| ||||||| || |||| | |||||||||||||||| |||||||||||| ||||||| |||| |||||||||| |
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|
| T |
6935410 |
gggg-acagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctacatggctttcctactctttctg |
6935334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 6954811 - 6954661
Alignment:
| Q |
20 |
tttatttgaatagtagtattagttggtgtgttcgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgattt |
119 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| ||||| |||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||| | |
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|
| T |
6954811 |
tttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtgatcatctcacttgatat |
6954712 |
T |
|
| Q |
120 |
ggggaacagagagatatacacagttgttgctccctcgatattgtgatgaaga |
171 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
6954711 |
gagg-acagagacatatacacagttgttgctcccccgatgttgtgatgaaga |
6954661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 18965093 - 18964978
Alignment:
| Q |
52 |
cgtcatcgatataattgtcatttgaagaatcttacagttgaacaacttgtgattatctcacttgatttggggaacagagagatatacacagttgttgctc |
151 |
Q |
| |
|
||||| || |||||||||||| |||| |||| | |||| ||| |||||||||||||||||||| ||||| | |||| || |||||||||||| ||| |
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|
| T |
18965093 |
cgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctgggg-atggagacatttacacagttgttactc |
18964995 |
T |
|
| Q |
152 |
cctcgatattgtgatga |
168 |
Q |
| |
|
|||| || ||||||||| |
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|
| T |
18964994 |
cctccatgttgtgatga |
18964978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 53774685 - 53774754
Alignment:
| Q |
75 |
gaagaatcttacagttgaacaacttgtgattatctcacttgatttggggaacagagagatatacacagttg |
145 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || |||||||||| | ||||||| ||||||||||||| |
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|
| T |
53774685 |
gaagaatcttacaaccgaacaatttgtgattatttcgcttgatttggag-acagagacatatacacagttg |
53774754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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