View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1477_high_4 (Length: 516)

Name: NF1477_high_4
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1477_high_4
NF1477_high_4
[»] chr7 (3 HSPs)
chr7 (148-336)||(8179563-8179735)
chr7 (461-499)||(8179257-8179295)
chr7 (35-74)||(8195488-8195527)
[»] chr2 (2 HSPs)
chr2 (238-402)||(33662450-33662613)
chr2 (312-406)||(33662378-33662468)
[»] chr1 (4 HSPs)
chr1 (301-406)||(20014302-20014403)
chr1 (238-378)||(20014605-20014746)
chr1 (310-367)||(20014268-20014326)
chr1 (362-402)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (401-451)||(47444469-47444519)
chr3 (310-406)||(6524724-6524816)
chr3 (326-370)||(44364931-44364975)
chr3 (327-367)||(6524651-6524691)
chr3 (310-364)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (419-458)||(36130417-36130456)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 336
Target Start/End: Complemental strand, 8179735 - 8179563
Alignment:
Q  148 atggagtgcaagttc---atttccttgctggctgaatcttgacgagttgtagaccaagtttgctcacaattgtcgcttgttccagtacttgcagacgaat 244  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  8179735 atggagtgcaagttcttcatttccttgctggctgaatcttgacgagttgtagaccaagtttgctcacagttgtcgcttgtt-cagcacttgcagacgaat 8179637  T
Q  245 acaaaccatctatctccttcaaacgaccgatatcaacaactgcatgatacatgacaacatatgattcaaatcctaagtttccaattacacaa 336  Q
    |                  ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||    
T  8179636 a------------------caaacgaccgagatcaacaactgcatgatacatgactgcatatgattcaaatcctaagtttctaattaaacaa 8179563  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 8179295 - 8179257
Alignment:
Q  461 cgggtcagcaagagttatgtggggttgctagctcctatt 499  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8179295 cgggtcagcaagagttatgtggggttgctagctcctatt 8179257  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 8195527 - 8195488
Alignment:
Q  35 aaaattgatttacggaaaagttcattctcataacgtttta 74  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  8195527 aaaattgatttaaggaaaagttcattctcataacgtttta 8195488  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 238 - 402
Target Start/End: Complemental strand, 33662613 - 33662450
Alignment:
Q  238 gacgaatacaaaccatct-atctccttcaaacgaccgatatcaacaactgcatgatacatgacaacatatgattcaaatcctaagtttccaattacacaa 336  Q
    |||||||||||||||||| |||||  ||||||||| || || ||| ||||||||||||| | | ||||  || |||||| |||||||| |||||| ||||    
T  33662613 gacgaatacaaaccatctgatctcaatcaaacgactgagattaacgactgcatgatacagggctacat--gagtcaaattctaagttttcaattaaacaa 33662516  T
Q  337 aaacgacacaatttattaaattaaattaaatgcattacatatgagtcaaatcctaattttccaatt 402  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  33662515 aaacgacacaattgattaaattaaattaaatgcactacatataagtgaaatcttaattttccaatt 33662450  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 33662468 - 33662378
Alignment:
Q  312 aaatcctaagtttccaattacacaaaaacgacacaatttattaaattaaattaaatgcattacatatgagtcaaatcctaattttccaatttaaa 406  Q
    ||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    ||||||||||| ||||||||| |||||    
T  33662468 aaatcttaattttccaattaaacaaaaacgacacaattgattaaattaaattaaatgcactaca----agtcaaatccttattttccaaattaaa 33662378  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 20014403 - 20014302
Alignment:
Q  301 acatatgattcaaatcctaagtttccaattacacaaaaacgacacaatttattaaattaaattaaatgcattacatatgagtcaaatcctaattttccaa 400  Q
    |||||||| |||| || ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    |||||||||||||||||||||    
T  20014403 acatatgagtcaactcttaattttccaattaaacaaaaacgacacaattgattaaattaaattaaatgcactaca----agtcaaatcctaattttccaa 20014308  T
Q  401 tttaaa 406  Q
     |||||    
T  20014307 attaaa 20014302  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 238 - 378
Target Start/End: Complemental strand, 20014746 - 20014605
Alignment:
Q  238 gacgaatacaaaccatct-atctccttcaaacgaccgatatcaacaactgcatgatacatgacaacatatgattcaaatcctaagtttccaattacacaa 336  Q
    ||||||||||| |||||  |||||| |||||||| ||| || ||| | ||||||||||||| | |||  ||| |||||||||||||||  ||||| ||||    
T  20014746 gacgaatacaatccatcagatctccatcaaacgatcgagattaacgattgcatgatacatggctacacttgagtcaaatcctaagtttttaattaaacaa 20014647  T
Q  337 aaacgacacaatttattaaattaaattaaatgcattacatat 378  Q
    ||||||  ||||| |||||||||||||||||||| |||||||    
T  20014646 aaacgaagcaattgattaaattaaattaaatgcactacatat 20014605  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 20014326 - 20014268
Alignment:
Q  310 tcaaatcctaagtttccaa-ttacacaaaaacgacacaatttattaaattaaattaaat 367  Q
    ||||||||||| ||||||| ||| ||||||||  ||||||| |||||||||||||||||    
T  20014326 tcaaatcctaattttccaaattaaacaaaaacatcacaattgattaaattaaattaaat 20014268  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 20014414 - 20014374
Alignment:
Q  362 ttaaatgcattacatatgagtcaaatcctaattttccaatt 402  Q
    ||||||||| |||||||||||||| || |||||||||||||    
T  20014414 ttaaatgcactacatatgagtcaactcttaattttccaatt 20014374  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 47444519 - 47444469
Alignment:
Q  401 tttaaagacgttgactacttttgctttgctaactaatgttaatttgaaatt 451  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47444519 tttaaagacgttgaccacttttgctttgctaactaatgttgatttgaaatt 47444469  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 6524724 - 6524816
Alignment:
Q  310 tcaaatcctaagtttccaattacacaaaaacgacacaatttattaaattaaattaaatgcattacatatgagtcaaatcctaattttccaatttaaa 406  Q
    ||||||| ||| || ||||||  ||||||||||||||||| ||||| |||||||||||||| || |    ||||||||||||||||||||| |||||    
T  6524724 tcaaatcttaatttaccaattgaacaaaaacgacacaattgattaagttaaattaaatgcactaaa----agtcaaatcctaattttccaaattaaa 6524816  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 44364975 - 44364931
Alignment:
Q  326 caattacacaaaaacgacacaatttattaaattaaattaaatgca 370  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  44364975 caattaaacaaaaacgacacaattgattaaattaaattaaatgca 44364931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 6524651 - 6524691
Alignment:
Q  327 aattacacaaaaacgacacaatttattaaattaaattaaat 367  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  6524651 aattaaacaaaaacgacacaattgattaaattaaattaaat 6524691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 6524792 - 6524847
Alignment:
Q  310 tcaaatcctaagtttccaa-ttacacaaaaacgacacaatttattaaattaaatta 364  Q
    ||||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||    
T  6524792 tcaaatcctaattttccaaattaaacaaaaacaacacaattgattaaattaaatta 6524847  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 458
Target Start/End: Complemental strand, 36130456 - 36130417
Alignment:
Q  419 ttttgctttgctaactaatgttaatttgaaattcatcaat 458  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  36130456 ttttgctttgctaattaatgttaatttgaaattcatcaat 36130417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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