View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_high_5 (Length: 437)
Name: NF1477_high_5
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 40077121 - 40077548
Alignment:
| Q |
1 |
cttattgggccaagtatcctatggttcgggccgcaatgttggcccatccggaagttgaatggatatggtgggtcgactctgatgccatcttcactgacat |
100 |
Q |
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| T |
40077121 |
cttattgggccaagtatcctatggttcgggccgcaatgttggcccatccggaagttgaatggatatggtgggtcgactctgatgccatcttcactgacat |
40077220 |
T |
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| Q |
101 |
ggagttcaagttaccgttatggcgttacaatgatcacaaccttgtgattcatggttgggaagagttggtaaagaaagaacatagctggactgggctaaac |
200 |
Q |
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| T |
40077221 |
ggagttcaagttacccttatggcgttacaatgatcacaaccttgtgattcatggttgggaagagttggtaaagaaagaacatagctggactgggctaaac |
40077320 |
T |
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| Q |
201 |
gcgggtgttttcttgatgaggaattgtcagtggtcgttggactttatggatgtttgggccagtatgggcccaaacagtccagaatacgagaaatggggtg |
300 |
Q |
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| T |
40077321 |
gcgggtgttttcttgattaggaattgtcagtggtcgttggactttatggatgtttgggccagtatgggcccaaacagtccagaatacgagaaatggggtg |
40077420 |
T |
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| Q |
301 |
agaggttgagagcaactttcaagacaaaagttgtacctgattctgatgaccagacggcgcttgcttacttgattgcgatgggagaggacaaatggacgat |
400 |
Q |
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| T |
40077421 |
agaggttgagagcaactttcaagacaaaagttgtacctgattctgatgaccagactgcgcttgcttacttgattgcgatgggagaggacaaatggacgaa |
40077520 |
T |
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| Q |
401 |
gaagatctatatggaaaatgagtattat |
428 |
Q |
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| T |
40077521 |
gaagatctatatggaaaatgagtattat |
40077548 |
T |
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