View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_high_9 (Length: 327)
Name: NF1477_high_9
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 7831932 - 7831629
Alignment:
| Q |
19 |
tcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatttcaacagaataacaatatttctcaccctctcccaaa |
118 |
Q |
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| T |
7831932 |
tcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatttcaacagaataacaatatttctcaccctctcccaaa |
7831833 |
T |
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| Q |
119 |
aggtttctttcccattccagcttctccaaacaagtggatctccatcttgtaactcaacgcttccccaatagcgacgtcttggagctgagacttcatcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7831832 |
aggtttctttcccattccagcttctccaaacaagtggatctccatcttgtaactcaacgcttccccaatagcgacgtcttggagctgagacttcatcttc |
7831733 |
T |
|
| Q |
219 |
gactcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctgtacatcctttctctgtgctttcactcccctttgt |
318 |
Q |
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| T |
7831732 |
ggctcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctatacatcctttctctgtgctttcactcctcttttt |
7831633 |
T |
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| Q |
319 |
ttct |
322 |
Q |
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|||| |
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| T |
7831632 |
ttct |
7831629 |
T |
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