View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_12 (Length: 327)
Name: NF1477_low_12
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 42759628 - 42759792
Alignment:
| Q |
147 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
246 |
Q |
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| T |
42759628 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
42759727 |
T |
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| Q |
247 |
tcaggcatgtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
311 |
Q |
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| T |
42759728 |
tcaggcatgtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaag |
42759792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42759433 - 42759505
Alignment:
| Q |
16 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactggatactt-aattaaacagaaatagtc |
87 |
Q |
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| T |
42759433 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactagatacttaaattaaacagaaatagtc |
42759505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 159 - 311
Target Start/End: Complemental strand, 1402208 - 1402056
Alignment:
| Q |
159 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacagtcaggcatgtat |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
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| T |
1402208 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaacggaaacagtcaggcatgtgt |
1402109 |
T |
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| Q |
259 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
311 |
Q |
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| T |
1402108 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
1402056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1402400 - 1402329
Alignment:
| Q |
16 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactggatacttaattaaacagaaatagtc |
87 |
Q |
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| T |
1402400 |
cagagaattacttagggcaaaatataaatggaattgaaatgaaactggatacttaattaaacagatatagtc |
1402329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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