View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_13 (Length: 310)
Name: NF1477_low_13
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_13 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29121513 - 29121222
Alignment:
| Q |
1 |
attaatatggattttaatgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagt |
100 |
Q |
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| T |
29121513 |
attaatatggattttaatgcttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagt |
29121414 |
T |
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| Q |
101 |
gagctctgagaatctttcagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggtacaatgccatttcaatt |
200 |
Q |
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| T |
29121413 |
gagctctgagaatctttcagttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgaccaaaaatggtacaatgccatttcagtt |
29121314 |
T |
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| Q |
201 |
atagtacttttttactttaaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggtttatgt |
292 |
Q |
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| T |
29121313 |
atagtactttttcattttaaagttttcaacatgtcatgcttccattttccctaattagccaacaatttttaatggttaacttgggtttatgt |
29121222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 32773817 - 32773980
Alignment:
| Q |
20 |
cttgcaggaagctattgttgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttca |
119 |
Q |
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| T |
32773817 |
cttgcaggaagctgttgttgatccaccatatgtagcctttgcaattaggcctaatccaggagtttgggaatacgtacgtgtcaattctgaggacctctct |
32773916 |
T |
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| Q |
120 |
gttgaacctataacatccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggt |
183 |
Q |
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| T |
32773917 |
gttgagcctatcacccccacagattacctcaaattcaaggaaagagtatatgaccaaaaatggt |
32773980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 6732199 - 6732050
Alignment:
| Q |
36 |
gttgatccaccatatgttgcctttgcagtaag---gccagaccctggagtttgggaatatgtaaaagtgagctctgagaatctttcagttgaacctataa |
132 |
Q |
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| T |
6732199 |
gttgatccaccgtatgttgcctttcaagtaagccagcaggacactgaagtttgggagt--gtaagagtgagcgctgagaaccttccacttgaacctataa |
6732102 |
T |
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| Q |
133 |
catccaccgattacctcaaattcaaggaaagaatatacgatcaaaaatggta |
184 |
Q |
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| T |
6732101 |
catccaccgattacgtcaaattaaaagaaagaatatatgataaaaaatggta |
6732050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 6654981 - 6654926
Alignment:
| Q |
38 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
93 |
Q |
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| T |
6654981 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
6654926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 10584 - 10529
Alignment:
| Q |
38 |
tgatccaccatatgttgcctttgcagtaaggccagaccctggagtttgggaatatg |
93 |
Q |
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| T |
10584 |
tgatccaccatatgttgcctttgcaggaaggccagatcctggagtttgggaatatg |
10529 |
T |
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