View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_14 (Length: 305)
Name: NF1477_low_14
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 35458925 - 35458807
Alignment:
| Q |
1 |
actatttcaaggtaccgcgtttgcgtttcgatttcactgtagttgaattttgaagattatacttgaaaaaatgattcgtatgtgtgagagaagcttccac |
100 |
Q |
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| T |
35458925 |
actatttcaaggtaccgcgtttgcgtttcgatttcactgtagttgaattttgaagattatacttgaaaaaattattcgtatgtgtgagagaagcttccac |
35458826 |
T |
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| Q |
101 |
taatctagatttttaaccg |
119 |
Q |
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| T |
35458825 |
taatctagatttttaaccg |
35458807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 35458725 - 35458635
Alignment:
| Q |
201 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatgaaatatttgcaaaattgatttgtaatcggtgatttttg |
291 |
Q |
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| T |
35458725 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatgaaatatttgcaaaattgatttgtaatcggtgatttttg |
35458635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 40849272 - 40849219
Alignment:
| Q |
201 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatga |
254 |
Q |
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| T |
40849272 |
gcttgttatggaattatgtttccagaatgagattataaaactgaattctgatga |
40849219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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