View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_16 (Length: 264)
Name: NF1477_low_16
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 41787751 - 41787998
Alignment:
| Q |
1 |
ctaaggcaaggaaagagaaaaaatagcaatgtactgaatatacttgtgagctcatttgatctatcctgctcctccactaacgaaccacgtgttaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787751 |
ctaaggcaaggaaagagaaaaaatagcaatgtactgaatatacttgtgagctcatttgatctatcctgctcctccactaacgaaccacgtgttaaatttc |
41787850 |
T |
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| Q |
101 |
atgaaccaccatggaaatcacaatagaaagaagtcacacct-nnnnnnnnngttataacagactatatctatcaggtaaaaccacgtagtccaactctgg |
199 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41787851 |
atgaaccaccatggaactaacaatagaaagaagtcacacctaaaaaaaaaagttataacagactatatctatcaggtaaaaccacgtagtccacctctgg |
41787950 |
T |
|
| Q |
200 |
accctattcgacatatgtctcagtttttcattcattcgtctctctcag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787951 |
accctattcgacatatgtctcagtttttcattcattcgtctctctcag |
41787998 |
T |
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