View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_18 (Length: 252)
Name: NF1477_low_18
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 6490840 - 6490618
Alignment:
| Q |
13 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttact |
112 |
Q |
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| T |
6490840 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacatggacttgtttttact |
6490741 |
T |
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| Q |
113 |
gtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatattaatcctagccacataaacttctgctc |
212 |
Q |
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| T |
6490740 |
gtacatgaactaaatattgcaacatgttaacggaagacgcaattttctgctccaatatcaagcatagaaatattaatcctagccacataaacttctgctc |
6490641 |
T |
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| Q |
213 |
tatcagtttcaacttatagtctg |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
6490640 |
tatcagtttcaacttatagtctg |
6490618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 38699841 - 38700058
Alignment:
| Q |
13 |
gagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttact |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
38699841 |
gagacaatacctccagcttctgtagaagtacaattgt----caaagttaaacaatcatgtata--agattagaagttgaagacacggacttgtttttact |
38699934 |
T |
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| Q |
113 |
gtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatattaa------tcctagccacataaactt |
206 |
Q |
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| T |
38699935 |
gtag-ggaactcaatattgcagcatgttaacggaagacgcaattttctgctccaatctcaagcatagaaatattaaccctaggcctagccacataaattt |
38700033 |
T |
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| Q |
207 |
ctgctctatcagtttcaacttatag |
231 |
Q |
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|||| ||||||||||||| |||||| |
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| T |
38700034 |
ctgcactatcagtttcaatttatag |
38700058 |
T |
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