View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_2 (Length: 555)
Name: NF1477_low_2
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 29121503 - 29122050
Alignment:
| Q |
1 |
tccatattaattaataagcctatgaaacaacgacatataaccctagacttcgataataatttaagagaatagatatgattaaatataactacacgtgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121503 |
tccatattaattaataagcctatgaaacaacgacatataaccctatacttcgataataatttaagagaatagatatgattaaatataactacacgtgttt |
29121602 |
T |
|
| Q |
101 |
atcacgtcagacaccaaatatatctaaagcaatatggtcggtccaactaactatttttcttaatatcattttttcaaatttaaataaatttagacgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121603 |
atcacgtcagacaccaaatatatctaaagcaatatggtctttccaactaactatttttcttaatatcattttttcaaatttaaataaatttagacgacaa |
29121702 |
T |
|
| Q |
201 |
aatatgacaaaaaatagtgatagacggacatgctagtgtccgtctttccagtagtccatataaggttagtaaaatgtaaattaatttatag--cnnnnnn |
298 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29121703 |
aatatgacaaaaaatagtgatagacggacatactagtgtccgtctttccagttgtccatataaggttagtaaaatgtaaattaatttataggaaaaaaag |
29121802 |
T |
|
| Q |
299 |
nnnntgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaagccaagattgccttccaatatttgattcctatcattctggtcctttata |
398 |
Q |
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| T |
29121803 |
aaaatgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaaaccaagattgccttccaatatttgattcctatcattctggtcctttata |
29121902 |
T |
|
| Q |
399 |
acttgctccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgct |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29121903 |
acttgctccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatctactctgct |
29122002 |
T |
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| Q |
499 |
tcgatgcatctggtgatgacatattgttatctgttattgaatctgtgc |
546 |
Q |
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| T |
29122003 |
tcgatgcatctggtgatgacatattgttatctgttattgaatctgtgc |
29122050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 327 - 510
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
327 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
424 |
Q |
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|||| ||||||||||||||| |||||||| |||||||||||||||||||||| | | | ||| ||| |||| |||||||||||||||||||||||| || |
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| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
|
| Q |
425 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
510 |
Q |
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| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 486
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
408 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
486 |
Q |
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|||||||||||||| ||||||| ||||||| | ||||||||| ||| |||| |||| ||||| ||| ||||| |||||| |
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| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 508
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
405 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
504 |
Q |
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|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
|
| Q |
505 |
catc |
508 |
Q |
| |
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|||| |
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| T |
32773510 |
catc |
32773507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 32931545 - 32931498
Alignment:
| Q |
51 |
cgataataatttaagagaatagatatgattaaatataactacacgtgt |
98 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaatataactacatgtgt |
32931498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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