View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1477_low_20 (Length: 247)

Name: NF1477_low_20
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1477_low_20
NF1477_low_20
[»] chr8 (8 HSPs)
chr8 (109-247)||(20529043-20529181)
chr8 (16-52)||(20529239-20529275)
chr8 (17-52)||(22221739-22221775)
chr8 (17-52)||(22228081-22228117)
chr8 (17-52)||(24716267-24716303)
chr8 (20-52)||(25123265-25123297)
chr8 (17-52)||(37612490-37612526)
chr8 (17-52)||(43372906-43372942)
[»] chr3 (12 HSPs)
chr3 (130-247)||(12371496-12371613)
chr3 (17-52)||(6153720-6153755)
chr3 (23-52)||(6146163-6146192)
chr3 (16-52)||(39657349-39657386)
chr3 (17-52)||(2050607-2050643)
chr3 (17-52)||(7854775-7854811)
chr3 (17-52)||(13839686-13839722)
chr3 (17-52)||(16181335-16181371)
chr3 (17-52)||(16995476-16995512)
chr3 (17-52)||(28558959-28558995)
chr3 (17-52)||(33342690-33342726)
chr3 (17-52)||(51960535-51960571)
[»] chr5 (6 HSPs)
chr5 (142-246)||(26682403-26682507)
chr5 (137-247)||(29755691-29755801)
chr5 (17-52)||(21397914-21397949)
chr5 (17-52)||(4866056-4866092)
chr5 (17-52)||(7729249-7729285)
chr5 (17-52)||(32951480-32951516)
[»] chr2 (5 HSPs)
chr2 (138-247)||(2974222-2974331)
chr2 (17-52)||(17367641-17367676)
chr2 (17-52)||(24293918-24293953)
chr2 (17-52)||(9652309-9652345)
chr2 (17-52)||(19794135-19794171)
[»] scaffold1964 (1 HSPs)
scaffold1964 (124-247)||(380-503)
[»] scaffold0673 (2 HSPs)
scaffold0673 (17-52)||(223-258)
scaffold0673 (17-52)||(6234-6270)
[»] chr4 (6 HSPs)
chr4 (17-52)||(44056741-44056776)
chr4 (17-50)||(39121005-39121038)
chr4 (17-52)||(15045634-15045670)
chr4 (17-52)||(15108754-15108790)
chr4 (17-52)||(25118590-25118626)
chr4 (17-52)||(55375993-55376029)
[»] scaffold0692 (1 HSPs)
scaffold0692 (17-52)||(4508-4543)
[»] scaffold0120 (1 HSPs)
scaffold0120 (17-52)||(22324-22359)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-52)||(70010-70045)
[»] chr7 (10 HSPs)
chr7 (17-52)||(16212563-16212598)
chr7 (17-52)||(127228-127264)
chr7 (17-52)||(1936426-1936462)
chr7 (17-52)||(3060743-3060779)
chr7 (17-52)||(7293791-7293827)
chr7 (17-52)||(11288243-11288279)
chr7 (17-52)||(12247505-12247541)
chr7 (17-52)||(13036506-13036542)
chr7 (17-52)||(13275582-13275618)
chr7 (17-52)||(45451563-45451599)
[»] chr1 (8 HSPs)
chr1 (17-52)||(22402496-22402531)
chr1 (17-52)||(15860883-15860919)
chr1 (17-52)||(20446473-20446509)
chr1 (17-52)||(20532237-20532273)
chr1 (17-52)||(20887234-20887270)
chr1 (17-52)||(20913817-20913853)
chr1 (17-52)||(21719056-21719092)
chr1 (17-52)||(35521731-35521767)
[»] chr6 (5 HSPs)
chr6 (17-51)||(18433455-18433489)
chr6 (17-52)||(15863247-15863283)
chr6 (17-52)||(16086789-16086825)
chr6 (17-52)||(25633122-25633158)
chr6 (17-52)||(35008860-35008896)
[»] scaffold0234 (1 HSPs)
scaffold0234 (19-52)||(16815-16848)
[»] scaffold1539 (1 HSPs)
scaffold1539 (17-52)||(356-392)
[»] scaffold0740 (1 HSPs)
scaffold0740 (17-52)||(5106-5142)
[»] scaffold0686 (1 HSPs)
scaffold0686 (17-52)||(5282-5318)
[»] scaffold0335 (1 HSPs)
scaffold0335 (17-52)||(6810-6846)
[»] scaffold0302 (1 HSPs)
scaffold0302 (17-52)||(12907-12943)
[»] scaffold0218 (1 HSPs)
scaffold0218 (17-52)||(4590-4626)
[»] scaffold0175 (1 HSPs)
scaffold0175 (17-52)||(5519-5555)
[»] scaffold0162 (2 HSPs)
scaffold0162 (17-52)||(7625-7661)
scaffold0162 (17-52)||(12531-12567)
[»] scaffold0116 (1 HSPs)
scaffold0116 (17-52)||(30908-30944)
[»] scaffold0039 (1 HSPs)
scaffold0039 (17-52)||(11922-11958)
[»] scaffold0037 (1 HSPs)
scaffold0037 (17-52)||(97639-97675)
[»] scaffold0035 (2 HSPs)
scaffold0035 (17-52)||(108851-108887)
scaffold0035 (17-52)||(117352-117388)
[»] scaffold0034 (1 HSPs)
scaffold0034 (17-52)||(80667-80703)
[»] scaffold0028 (1 HSPs)
scaffold0028 (17-52)||(107220-107256)
[»] scaffold0023 (1 HSPs)
scaffold0023 (17-52)||(92483-92519)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-52)||(192903-192939)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 20529181 - 20529043
Alignment:
Q  109 cgggctgttacatggtggcaacgtcactttcggctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaag 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20529181 cgggctgttacatggtggcaacatcactttcggctattgaggctatctttgctttgctacagtctctatctgccacactctctcaacggttggctgcaag 20529082  T
Q  209 tttttgatgtctttgaaagcataggaatataaaggtgtg 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20529081 tttttgatgtctttgaaagcataggaatataaaggtgtg 20529043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 20529275 - 20529239
Alignment:
Q  16 ctctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  20529275 ctctaacacggaaaccatgaaaatgcacccaatgatg 20529239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 22221775 - 22221739
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  22221775 tctaacacggaaacccatgaaaatgcacccaatgatg 22221739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 22228117 - 22228081
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  22228117 tctaacacggaaacccatgaaaatgcacccaatgatg 22228081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 24716303 - 24716267
Alignment:
Q  17 tctaacacggaaa-ccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24716303 tctaacacggaaagccatgaaaatgcacccaatgatg 24716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 25123265 - 25123297
Alignment:
Q  20 aacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||||||| |||||||||    
T  25123265 aacacggaaaccatgaaaatgcatccaatgatg 25123297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 37612490 - 37612526
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37612490 tctaacacggaaacccatgaaaatgcacccaatgatg 37612526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 43372942 - 43372906
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43372942 tctaacacggaaacccatgaaaatgcacccaatgatg 43372906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 12371613 - 12371496
Alignment:
Q  130 cgtcactttcggctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaagtttttgatgtctttgaaagca 229  Q
    |||||| |||||||||||| || ||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||||||  |||||  ||||||| || ||    
T  12371613 cgtcaccttcggctattgaagcaatctttgttttactacagtctctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaaca 12371514  T
Q  230 taggaatataaaggtgtg 247  Q
    ||||||||||||||||||    
T  12371513 taggaatataaaggtgtg 12371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 6153755 - 6153720
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||||||||||||||||| |||||||||||    
T  6153755 tctaacacggaaaccatgaaaatgtacccaatgatg 6153720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 6146192 - 6146163
Alignment:
Q  23 acggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||||||||||||||    
T  6146192 acggaaaccatgaaaatgcacccaatgatg 6146163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 39657349 - 39657386
Alignment:
Q  16 ctctaacacggaaa-ccatgaaaatgcacccaatgatg 52  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39657349 ctctaacacggaaatccatgaaaatgcacccaatgatg 39657386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 2050607 - 2050643
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2050607 tctaacacggaaacccatgaaaatgcacccaatgatg 2050643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 7854775 - 7854811
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7854775 tctaacacggaaacccatgaaaatgcacccaatgatg 7854811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 13839686 - 13839722
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13839686 tctaacacggaaacccatgaaaatgcacccaatgatg 13839722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 16181371 - 16181335
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16181371 tctaacacggaaacccatgaaaatgcacccaatgatg 16181335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 16995512 - 16995476
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16995512 tctaacacggaaacctatgaaaatgcacccaatgatg 16995476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 28558959 - 28558995
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28558959 tctaacacggaaacccatgaaaatgcacccaatgatg 28558995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 33342690 - 33342726
Alignment:
Q  17 tctaacacggaaac-catgaaaatgcacccaatgatg 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33342690 tctaacacggaaactcatgaaaatgcacccaatgatg 33342726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 51960571 - 51960535
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  51960571 tctaacacggaaacccatgaaaatgcacccaatgatg 51960535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 26682403 - 26682507
Alignment:
Q  142 ctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaagtttttgatgtctttgaaagcataggaatataaa 241  Q
    ||||||| |||||| ||||||||||||| ||||||||  ||| ||| | |||||||||||||||||  |||||  ||||||| || ||||||||||||||    
T  26682403 ctattgaagctatctttgctttgctacactctctatccaccacactttttcaacggttggctgcaatattttggagtctttggaaacataggaatataaa 26682502  T
Q  242 ggtgt 246  Q
    |||||    
T  26682503 ggtgt 26682507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 29755801 - 29755691
Alignment:
Q  137 ttcggctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaagtttttgatgtctttgaaagcataggaat 236  Q
    |||||| |||||||| ||  ||||||||||||| ||| ||||||  |  ||||| |||||| |||| |||| ||||||  | ||||| |||||||||||     
T  29755801 ttcggccattgaggccatttttgctttgctacaatctttatctgttacgctctcccaacggctggcagcaattttttggagcctttggaagcataggaac 29755702  T
Q  237 ataaaggtgtg 247  Q
    |||||||||||    
T  29755701 ataaaggtgtg 29755691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 21397914 - 21397949
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21397914 tctaatacggaaaccatgaaaatgcacccaatgatg 21397949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 4866056 - 4866092
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4866056 tctaacacggaaacccatgaaaatgcacccaatgatg 4866092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 7729249 - 7729285
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7729249 tctaacacggaaacccatgaaaatgcacccaatgatg 7729285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 32951480 - 32951516
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32951480 tctaacacggaaacccatgaaaatgcacccaatgatg 32951516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 2974331 - 2974222
Alignment:
Q  138 tcggctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaagtttttgatgtctttgaaagcataggaata 237  Q
    ||||| |||||||| ||  |||| ||| |||| ||| ||||||||| ||| ||||||||| |||||||||  |||||  ||||||| |||||||||||      
T  2974331 tcggccattgaggcaatttttgcgttgttacattctttatctgccacactttctcaacggctggctgcaatattttggagtctttggaagcataggaact 2974232  T
Q  238 taaaggtgtg 247  Q
    ||||||||||    
T  2974231 taaaggtgtg 2974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 17367641 - 17367676
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||||||||||||||||| |||||||||||    
T  17367641 tctaacacggaaaccatgaaaatgtacccaatgatg 17367676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 24293953 - 24293918
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||||| |||||||||||||||||||||||    
T  24293953 tctaacacggaacccatgaaaatgcacccaatgatg 24293918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 9652345 - 9652309
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9652345 tctaacacggaaacccatgaaaatgcacccaatgatg 9652309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 19794171 - 19794135
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19794171 tctaacacggaaacccatgaaaatgcacccaatgatg 19794135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 380 - 503
Alignment:
Q  124 tggcaacgtcactttcggctattgaggctatccttgctttgctacagtctctatctgccatactctctcaacggttggctgcaagtttttgatgtctttg 223  Q
    ||||| ||||||  ||||| |||||||| ||  |||| ||| || | ||| ||||||||| ||| ||||||||||||| |||||  |||||  |||||||    
T  380 tggcatcgtcaccctcggccattgaggcaatttttgcattgttatattctttatctgccacactttctcaacggttggttgcaatattttggagtctttg 479  T
Q  224 aaagcataggaatataaaggtgtg 247  Q
     |||||||||||  ||||||||||    
T  480 gaagcataggaacttaaaggtgtg 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 258 - 223
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  258 tctaacacggaaaccatgaaaatgcacccaatgatg 223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 6270 - 6234
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6270 tctaacacggaaacccatgaaaatgcacccaatgatg 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 44056741 - 44056776
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  44056741 tctaacacggaaaccatgaaaatgcacccaatgatg 44056776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 39121038 - 39121005
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatga 50  Q
    ||||||||||||||||||||||||||||||||||    
T  39121038 tctaacacggaaaccatgaaaatgcacccaatga 39121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 15045634 - 15045670
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15045634 tctaacacggaaacccatgaaaatgcacccaatgatg 15045670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 15108790 - 15108754
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15108790 tctaacacggaaacccatgaaaatgcacccaatgatg 15108754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 25118626 - 25118590
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25118626 tctaacacggaaacccatgaaaatgcacccaatgatg 25118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 55376029 - 55375993
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  55376029 tctaacacggaaacccatgaaaatgcacccaatgatg 55375993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 4543 - 4508
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4543 tctaatacggaaaccatgaaaatgcacccaatgatg 4508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22324 - 22359
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22324 tctaacacggaaatcatgaaaatgcacccaatgatg 22359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 70045 - 70010
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||||||| ||||||||||||    
T  70045 tctaacacggaaaccatgaaaatacacccaatgatg 70010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 16212563 - 16212598
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||||||||||||||||||||| |||||||    
T  16212563 tctaacacggaaaccatgaaaatgcacctaatgatg 16212598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 127228 - 127264
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  127228 tctaacacggaaacccatgaaaatgcacccaatgatg 127264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 1936462 - 1936426
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  1936462 tctaacacggaaacccatgaaaatgcacccaatgatg 1936426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 3060743 - 3060779
Alignment:
Q  17 tctaacacggaaac-catgaaaatgcacccaatgatg 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3060743 tctaacacggaaactcatgaaaatgcacccaatgatg 3060779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 7293791 - 7293827
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7293791 tctaacacggaaacccatgaaaatgcacccaatgatg 7293827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 11288243 - 11288279
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  11288243 tctaacacggaaacccatgaaaatgcacccaatgatg 11288279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 12247541 - 12247505
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12247541 tctaacacggaaacccatgaaaatgcacccaatgatg 12247505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 13036542 - 13036506
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13036542 tctaacacggaaacccatgaaaatgcacccaatgatg 13036506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 13275582 - 13275618
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13275582 tctaacacggaaacccatgaaaatgcacccaatgatg 13275618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 45451599 - 45451563
Alignment:
Q  17 tctaacacggaaa-ccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  45451599 tctaacacggaaatccatgaaaatgcacccaatgatg 45451563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 22402531 - 22402496
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgatg 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22402531 tctaacacggaaaccatgagaatgcacccaatgatg 22402496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 15860919 - 15860883
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15860919 tctaacacggaaacccatgaaaatgcacccaatgatg 15860883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20446473 - 20446509
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20446473 tctaacacggaaacccatgaaaatgcacccaatgatg 20446509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20532237 - 20532273
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20532237 tctaacacggaaacccatgaaaatgcacccaatgatg 20532273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 20887270 - 20887234
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20887270 tctaacacggaaacccatgaaaatgcacccaatgatg 20887234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20913817 - 20913853
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20913817 tctaacacggaaacccatgaaaatgcacccaatgatg 20913853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 21719056 - 21719092
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  21719056 tctaacacggaaacccatgaaaatgcacccaatgatg 21719092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 35521767 - 35521731
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35521767 tctaacacggaaacccatgaaaatgcacccaatgatg 35521731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 18433455 - 18433489
Alignment:
Q  17 tctaacacggaaaccatgaaaatgcacccaatgat 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  18433455 tctaacacggaaaccatgagaatgcacccaatgat 18433489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 15863247 - 15863283
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15863247 tctaacacggaaacccatgaaaatgcacccaatgatg 15863283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 16086789 - 16086825
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16086789 tctaacacggaaacccatgaaaatgcacccaatgatg 16086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 25633158 - 25633122
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25633158 tctaacacggaaacccatgaaaatgcacccaatgatg 25633122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 35008896 - 35008860
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35008896 tctaacacggaaacccatgaaaatgcacccaatgatg 35008860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 16848 - 16815
Alignment:
Q  19 taacacggaaaccatgaaaatgcacccaatgatg 52  Q
    |||||||||| |||||||||||||||||||||||    
T  16848 taacacggaacccatgaaaatgcacccaatgatg 16815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1539 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1539
Description:

Target: scaffold1539; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 356 - 392
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  356 tctaacacggaaacccatgaaaatgcacccaatgatg 392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 5106 - 5142
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5106 tctaacacggaaacccatgaaaatgcacccaatgatg 5142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 5318 - 5282
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5318 tctaacacggaaacccatgaaaatgcacccaatgatg 5282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 6810 - 6846
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6810 tctaacacggaaacccatgaaaatgcacccaatgatg 6846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 12907 - 12943
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12907 tctaacacggaaacccatgaaaatgcacccaatgatg 12943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 4626 - 4590
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4626 tctaacacggaaacccatgaaaatgcacccaatgatg 4590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 5519 - 5555
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5519 tctaacacggaaacccatgaaaatgcacccaatgatg 5555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 7661 - 7625
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7661 tctaacacggaaacccatgaaaatgcacccaatgatg 7625  T

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Target: scaffold0162; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 12531 - 12567
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12531 tctaacacggaaacccatgaaaatgcacccaatgatg 12567  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 30908 - 30944
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30908 tctaacacggaaacccatgaaaatgcacccaatgatg 30944  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 11958 - 11922
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  11958 tctaacacggaaacccatgaaaatgcacccaatgatg 11922  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 97639 - 97675
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  97639 tctaacacggaaacccatgaaaatgcacccaatgatg 97675  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 108887 - 108851
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  108887 tctaacacggaaacccatgaaaatgcacccaatgatg 108851  T

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Target: scaffold0035; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 117388 - 117352
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  117388 tctaacacggaaacccatgaaaatgcacccaatgatg 117352  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 80667 - 80703
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  80667 tctaacacggaaacccatgaaaatgcacccaatgatg 80703  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 107256 - 107220
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  107256 tctaacacggaaacccatgaaaatgcacccaatgatg 107220  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 92483 - 92519
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  92483 tctaacacggaaacccatgaaaatgcacccaatgatg 92519  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 192939 - 192903
Alignment:
Q  17 tctaacacggaaacc-atgaaaatgcacccaatgatg 52  Q
    ||||||||||||||| |||||||||||||||||||||    
T  192939 tctaacacggaaacccatgaaaatgcacccaatgatg 192903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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