View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1477_low_21 (Length: 247)
Name: NF1477_low_21
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 45348931 - 45349103
Alignment:
| Q |
10 |
attatactgttattgtttccgacatattttcaaaagttcttgagagccatatttaactttgtaatgtgagtaattttataaaattaattatgaaggtgaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45348931 |
attatactgttattgtttccgacatattttcaaaagttcttgagagccatatttaactttgtaatgtgagtaattttataaaattaattatgaaggtgaa |
45349030 |
T |
|
| Q |
110 |
taaatatgtgcaaaaataaattgttatcgagttnnnnnnnntggtttaaaacaatcctctagtttggaggata |
182 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45349031 |
taaatatgtgtaaaaataaattgttatcgagttaaaaaaaatggtttaaaacaatcctctagtttggaggata |
45349103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 45356233 - 45356301
Alignment:
| Q |
179 |
gatagagattatcacgagtttattactggtactagcgaaaagatagacatttacatgctcgtttatatg |
247 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45356233 |
gatagagattatcacgagtttattacttgtactagcgaaaagatagacatttacatgctcgtttatatg |
45356301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University