View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_22 (Length: 242)
Name: NF1477_low_22
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6490613 - 6490387
Alignment:
| Q |
1 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaat |
100 |
Q |
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| T |
6490613 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaat |
6490514 |
T |
|
| Q |
101 |
aatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490513 |
aatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgat |
6490414 |
T |
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| Q |
201 |
tcagcatgaatgacattgtgatcatat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6490413 |
tcagcatgaatgacattgtgatcatat |
6490387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38700068 - 38700294
Alignment:
| Q |
1 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38700068 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaatcaattccaagacactaaactagctccagagtccagaaaaat |
38700167 |
T |
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| Q |
101 |
aatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgat |
200 |
Q |
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|||||||| ||||||| ||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38700168 |
aatcaccataaagccacaacagtttggttctctaaataaccttcaccacagatccttacttaaatcatagaaaacccatctaccttttgtttctaatgat |
38700267 |
T |
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| Q |
201 |
tcagcatgaatgacattgtgatcatat |
227 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
38700268 |
tcagcatgaataacattgtgatcatat |
38700294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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