View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_23 (Length: 241)
Name: NF1477_low_23
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 49126764 - 49126936
Alignment:
| Q |
18 |
aacacatatttggcataacaaatttttggaaaacaaaataatacaatttcattgtgaaagttatgagcaagtttttcccaagaacaaagaatcttccaaa |
117 |
Q |
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| T |
49126764 |
aacacatatttggcataacaaattttcggaaaacaaaataatacaatttcattgtgaaagttatgagcaagtttttcccaagaacaaagaatcttccaaa |
49126863 |
T |
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| Q |
118 |
tattcaacaatagtgaagcttagtggcacgccattggttgacatgtttctctactcggcaagcataaattata |
190 |
Q |
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| T |
49126864 |
tattcaacaatagtgaagcttagtggcacgccattggttgacatgtttctcaactcggcaagcataaattata |
49126936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 49127234 - 49127274
Alignment:
| Q |
189 |
taaattacaaagcattaactctttcattaactttctagtat |
229 |
Q |
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| T |
49127234 |
taaattacaaagcattaactctttcattaacattttagtat |
49127274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 11556656 - 11556695
Alignment:
| Q |
65 |
ttcattgtgaaagttatgagcaagtttttcccaagaacaa |
104 |
Q |
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| T |
11556656 |
ttcatcgtgaaaattatgagcaagtttttcccaagaacaa |
11556695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 11542831 - 11542871
Alignment:
| Q |
64 |
tttcattgtgaaagttatgagcaagtttttcccaagaacaa |
104 |
Q |
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| T |
11542831 |
tttcatcgcgaaagttatgaacaagtttttcccaagaacaa |
11542871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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