View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_29 (Length: 232)
Name: NF1477_low_29
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 49976496 - 49976293
Alignment:
| Q |
17 |
aatatgataccagcagaaagagactacagaaagaaaaagatattgtagaggctatagtttgagtgattgtagaagataaagagctttgaaagttctctat |
116 |
Q |
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| T |
49976496 |
aatatgataccagcagaaagagactacagaaagaaaaagatattgtagaggctatagtttgagtgattgtagaagataaagagctttgaaagttctctat |
49976397 |
T |
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| Q |
117 |
cagttcttctgctacactctctctcacttacctcccttcttcatcatacacacgcacacacaatatttattgagttaatcaaacaataagggacagttct |
216 |
Q |
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| T |
49976396 |
cagttcttctgctacactctctctcacttacctcccttcttcatcatacacacgcacacacaatatttattgagttaatcaaacagtaagggacagttct |
49976297 |
T |
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| Q |
217 |
tctc |
220 |
Q |
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|||| |
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| T |
49976296 |
tctc |
49976293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 49954413 - 49954478
Alignment:
| Q |
75 |
ttgagtgattgtagaagataaagagctttgaaagttctctatcagttcttctgctacactctctctc |
141 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
49954413 |
ttgagtgatggtagaagataaagagctttgaaagttctctatcagttcttctgccac-ctctctctc |
49954478 |
T |
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