View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_3 (Length: 539)
Name: NF1477_low_3
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 29872629 - 29872126
Alignment:
| Q |
18 |
catcataggcccttcgacagacatttttctcatcatattgttgctgacaaatgtccaatccccacaaaaagtaagtctacaatacttctataacttacat |
117 |
Q |
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|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29872629 |
catcatagacccttcgacgaatgtttttctcatcatattgttgctgacaaatgtccaatccccacaaaaagtaagtctacaatacttctataacttacat |
29872530 |
T |
|
| Q |
118 |
aataaatatctgaaattttgaatggcaaacacaattgaaggagagaaaaccttatcaggggtcaaaacactgttgattggatcagcaaattcagccacaa |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29872529 |
aataaatatctgaaattttgaatggcaaacgcaattgaaggagagaaaaccttatcgggggtcaaaacactgttgattggatcagcaaattcagccacaa |
29872430 |
T |
|
| Q |
218 |
gttcatctgccacctacaatataaaaataatcacattaaagtcaagaaataaactgggaaaacaggaataatgactagtaagaaagagataatcagatag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29872429 |
gttcatctgccacctacaatataaaaataatcacattaaagtcaagaaataaactgggaaaacaggaataatgactagtaagaaagagatagtcagatag |
29872330 |
T |
|
| Q |
318 |
acaatatggattatggacggatgataaaaggcatcatacaagcccacaagttcttgacccaataacaattaccatgatcaccttcatccccaaaagctat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29872329 |
acaatatggattatggacggatgataaaaggcatcatacaagcccacaagttcttgacccaataacaattaccatgatcaccttcatccccaaaagctat |
29872230 |
T |
|
| Q |
418 |
catgataattattatacgaacataattctgaccatataattcaccatacgaagcaagatatcaatttcaacatagcaaaaactgacttaaagtaaccagc |
517 |
Q |
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| T |
29872229 |
catgataattatcatacgaacataattctgaccatataattcaccatacgaagcaagatatcaatttcaacatagcaaaaactgacttaaagtaaccagc |
29872130 |
T |
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| Q |
518 |
taac |
521 |
Q |
| |
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|||| |
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| T |
29872129 |
taac |
29872126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 29867528 - 29867456
Alignment:
| Q |
161 |
agaaaaccttatcaggggtcaaaacactgttgattggatcagcaaattcagccacaagttcatctgccaccta |
233 |
Q |
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||||||||| |||||||| |||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
29867528 |
agaaaacctgatcaggggacaaaccaccattgcttggatcagaaaattcagccacaagttcatctgccaccta |
29867456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 44575177 - 44575075
Alignment:
| Q |
165 |
aaccttatcaggggtcaaaacactgttgattggatcagcaaattcagccacaagttcatctgccacctacaatataaaaataatcacattaaagtcaaga |
264 |
Q |
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|||||||| ||||| |||| |||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||| |
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| T |
44575177 |
aaccttattaggggacaaaccactattcattggatcagcaagttcagccacaagttcatctgccacctagaatataaaaataa-cacgtcaaattcaaga |
44575079 |
T |
|
| Q |
265 |
aata |
268 |
Q |
| |
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|||| |
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|
| T |
44575078 |
aata |
44575075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 44575326 - 44575238
Alignment:
| Q |
17 |
acatcataggcccttcgacagacatttttctcatcatattgttgctgacaaatgtccaatccccac-aaaaagtaagtctacaatactt |
104 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| | ||||||||| |||||| ||||| |
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| T |
44575326 |
acatcataggcccttcgacgaacatttttctcatcatattgttgctgacaaatgttcattccccccaaaaaagtaaatctacagtactt |
44575238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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