View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1477_low_8 (Length: 391)
Name: NF1477_low_8
Description: NF1477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1477_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 126 - 375
Target Start/End: Original strand, 48096082 - 48096331
Alignment:
| Q |
126 |
aggtaatacttataaagttggaactttgatcggtgaaaagtggaaaataggtgttaagacatgcatttgtgcaaattaaagaaattgaacaggggataga |
225 |
Q |
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| T |
48096082 |
aggtaatacttataaagttggaactttgattggtgaaaagtggaaaataggtgttaagacatgcatttgtgcaaattaaagaaattgaacaggggataga |
48096181 |
T |
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| Q |
226 |
aaaattcaattaaaaattatagctatagctttcacacatgaaactccccctgattttgaaaagttattannnnnnngttactttttctgctacttgattt |
325 |
Q |
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| T |
48096182 |
aaaattcaattaaaaattatagctatagctttcacaaatgaaactccccctgattttgaaaagttattatttttttcttactttttctgctacttcattt |
48096281 |
T |
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| Q |
326 |
ccagattgatgagaatgtggctaaagagattatcaaccacaggtctcttc |
375 |
Q |
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| T |
48096282 |
ccagattgatgagaatgtggctaaagagattatcaaccacaggtctcttc |
48096331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 130 - 294
Target Start/End: Complemental strand, 39883478 - 39883320
Alignment:
| Q |
130 |
aatacttataaagttggaactttgatcggtgaaaagtggaaaataggtgttaagacatgcatttgtgcaaattaaagaaattgaacaggggatagaaaaa |
229 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
39883478 |
aatacttataaagttggaattttgattggtgaaaagtggaaaataggtgttaagatatgcatttgtgcaaattaatgaaattgagcaggggatagaaaaa |
39883379 |
T |
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| Q |
230 |
ttcaattaaaaattatagctatagctttcacacatgaaactccccctgattttgaaaagttatta |
294 |
Q |
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| T |
39883378 |
ttcaatcaaa------agttatagctttcacacatgaagctccccctgattttgagaagttatta |
39883320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 39883244 - 39883178
Alignment:
| Q |
309 |
tttctgctacttgatttccagattgatgagaatgtggctaaagagattatcaaccacaggtctcttc |
375 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39883244 |
tttctgctacttcatttccagattgatgagaatgtggctagagagattatcaaccacaggtctcttc |
39883178 |
T |
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