View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_high_10 (Length: 388)
Name: NF14780_high_10
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 26304752 - 26304388
Alignment:
| Q |
7 |
gagtgagaagaatcatgagaagcttgatagtttctcatttccttctttgtatcataatttgatgagtaagaagggtaaaaaagatggtcaaaataacaaa |
106 |
Q |
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| T |
26304752 |
gagtgagaagaatcatgacaagcttgatagtttctcatttccttctttgtatcataatttgatgagtaagaagggtaaaaaagatggtcaaaataacaaa |
26304653 |
T |
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| Q |
107 |
actgatactactacgcctcctgattcaactttttctactccaacatcatcaacatcggctcaatctcaatcctcgtttactaagattagaagcaattctg |
206 |
Q |
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| T |
26304652 |
actgatactactacgcctcctgattcaactttttctactccaacatcatcaacatcggctcaatctcaatcctcatttactaagattagaagcaattctg |
26304553 |
T |
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| Q |
207 |
ttagagtgactagtgtgttcagaaattggattggttgtggaactgttgcaacaaatgatgctgcttttgtctctatgaactctgctcagaaaactgcctc |
306 |
Q |
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| T |
26304552 |
ttagagtgactagtgtgttcagaaattggattggttgtggaactgttgcaacaaatgatgctgcttttgtctctatgaaccctgctaagaaaattgcccc |
26304453 |
T |
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| Q |
307 |
taaggagcttattaatatgccagaaaaaagggctgagatttgtaaaggagacaagctaggaggat |
371 |
Q |
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| T |
26304452 |
gaaggagcttactaatatgccagaaaaaagggctgagatttgtaaaggagacaaactaggaggat |
26304388 |
T |
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Back To:
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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 12133962 - 12134033
Alignment:
| Q |
17 |
aatcatgagaagcttgatagtttctcatttccttctttgtatcataatttgatgagtaagaagggtaaaaaa |
88 |
Q |
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| T |
12133962 |
aatcatgagaagtttgagactttctcatttccttctttgtatcgcaatttgatgattaagaagggttaaaaa |
12134033 |
T |
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