View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_high_16 (Length: 339)
Name: NF14780_high_16
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 42078566 - 42078898
Alignment:
| Q |
17 |
agataacattttattaggataaatctccaatcaaatacaattaaatagtgactaaaagtatttacaagctcgccacctctttcacgaagtatcattgtcc |
116 |
Q |
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| T |
42078566 |
agataacattttattaggataaatctccaatcaaatacaattaaatagtgactaaaagtatttacaggctcgccacctctttcacgaagtatcattgtcc |
42078665 |
T |
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| Q |
117 |
actac---------------tgttaggaatggatccattcatgcgacatgagcatccatcgaaatcccaatcatcc-------agaggg-nnnnnnntta |
193 |
Q |
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| T |
42078666 |
actacttagacaaccactattgttaggaatggatccattcatgcgacatgagcatccatcgaaatcccaatcatccactgatgagagggaaaaaaaatta |
42078765 |
T |
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| Q |
194 |
gcaaaaagtgaatcttaatggtcgagatttaaagcacatga-gnnnnnnnttttgaaacgatcctttcccctattgttagatctatatacgagggttttt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078766 |
gcaaaaagtgaatcttaatggtcgagatttaaagcacatgaggaaaaaaaatttgaaacgatcctttcccctattgttagatctatatacgagggttttt |
42078865 |
T |
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| Q |
293 |
actagattaccttctcttatttaggaggtattt |
325 |
Q |
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| T |
42078866 |
actagattaccttctcttatttaggaggtattt |
42078898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 41039571 - 41039611
Alignment:
| Q |
285 |
gggtttttactagattaccttctcttatttaggaggtattt |
325 |
Q |
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| T |
41039571 |
gggttttttctagattaccctctcttatttagaaggtattt |
41039611 |
T |
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