View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_high_27 (Length: 237)
Name: NF14780_high_27
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 2572152 - 2572355
Alignment:
| Q |
17 |
aatatacacacatgtgacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgacttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572152 |
aatatacacacatgtgacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgacttt |
2572251 |
T |
|
| Q |
117 |
aattgttatatgtacacgtcaagttaccccccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2572252 |
aattgttatatgtacacgtcaagttaccccccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaa |
2572351 |
T |
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| Q |
217 |
tggt |
220 |
Q |
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|||| |
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| T |
2572352 |
tggt |
2572355 |
T |
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