View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_high_5 (Length: 444)
Name: NF14780_high_5
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Original strand, 21343756 - 21344178
Alignment:
| Q |
6 |
cagaacaagtcagtaatctaaatggatgtagttgtacagcgcccaatatcacttcactgcttacctcaaagtgagattttaatttattcctaaccaattt |
105 |
Q |
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| T |
21343756 |
cagaacaagtcagttatctaaatggatgtagttgtacagcgcccaatatcacttcactgcttacctcaaagtgagattttaatttattcctaaccaattt |
21343855 |
T |
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| Q |
106 |
tcatccttcatgtacttgcagttattatatttatatgctaactaaaatttcataaagcttagtagttagttttggtgtgcatgcaatgtggtttttagtt |
205 |
Q |
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| T |
21343856 |
tcatccttcatgtacttgcagttattatatttatatgctaactaaaatttcataaagcttagtagttagttttggtgtgcatgcaatgtggtttttagtt |
21343955 |
T |
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| Q |
206 |
tttactgggtggttcttcagtttggtggaaccaacgtgccaattcattcctatgttaattgaataaatgtcacgttaga-tataattcaccttcattaat |
304 |
Q |
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| T |
21343956 |
tttactgggtggttcttcagtttggtggaaccaccgtgccaattcattcctatgttaattgaataaatgtcacgttagattataattcaccttcattaat |
21344055 |
T |
|
| Q |
305 |
tttcagaacaaaaagattggtgttaagtgttaactcaaagaaatgccaaaattaagttaccagaattaatgctgcaggaaaataggttcttcaatgagtc |
404 |
Q |
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| T |
21344056 |
tttcagaacaaaaagattggtgttaagtgttaactc--agaaatgccaaaattaagttaccagaattaatgctgcaggaaaataggttcttcaatgagtc |
21344153 |
T |
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| Q |
405 |
ttaatttaactcttgtgtggtttct |
429 |
Q |
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| T |
21344154 |
ttaatttaactcttgtgtggtttct |
21344178 |
T |
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