View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_high_9 (Length: 392)
Name: NF14780_high_9
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 116 - 386
Target Start/End: Original strand, 39497748 - 39498018
Alignment:
| Q |
116 |
tgtgtgaggacaagaactgtacttatagtactgcatctaagtttcaaaaatagcctaattcacttatataaatcattctagtctgtatttgtatttacaa |
215 |
Q |
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| T |
39497748 |
tgtgtgaggacaagaactgtacttatagtactgcatctaagtttcaaaaatagcctaattcacttatataaatcattctagtctgtatttgtatttacaa |
39497847 |
T |
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| Q |
216 |
ttgtaaattaagaagcataaacaactttactaagactatgttagctgaaagtcttttataaaagcttgctatcagaaagactaatatttcaagagaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39497848 |
ttgtaaattaagaagcataaacaactttactaagactatgttagctgaaagtcttttataaaagcttgctatcagaaacactaatatttcaagagaacat |
39497947 |
T |
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| Q |
316 |
ggaatgcaaggacagtaaaactaaccctagtgccattctaactttaagttggactccattggtgaagttga |
386 |
Q |
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| T |
39497948 |
ggaatgcaaggacagtaaaactaaccccagtgccattctaactttaagttggactccattggtgaagttga |
39498018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 39497602 - 39497711
Alignment:
| Q |
10 |
tagatatgtcataaattgtggtcatcgtggatatatcaaatttgtcattgttgaaaggatcaaatatattcttaatgtgtaaaataatagatcatgcatt |
109 |
Q |
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| T |
39497602 |
tagatatgtcataaattgtggtcatcgtggatatatcaaatttgtcattgttgaaaggatcaaatatattcttaatgtgtaaaataatagatcatgcatt |
39497701 |
T |
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| Q |
110 |
tgtgtttgtg |
119 |
Q |
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| T |
39497702 |
ggtgtttgtg |
39497711 |
T |
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