View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_1 (Length: 700)
Name: NF14780_low_1
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 43880004 - 43880685
Alignment:
| Q |
1 |
gtgatttggttgtggtaaatccctccaaagaagggaaagatgtacatcgatcatttaagttcaacaagattttcggccctgccgcaactcaaggtttatt |
100 |
Q |
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| T |
43880004 |
gtgatttggttgtggtaaatccctccaaagaagggaaagatgtacatcgatcatttaagttcaacaagattttcggccctgccgcaactcaaggtttatt |
43880103 |
T |
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| Q |
101 |
tatatattctattccatttttgagattaggctatggagaagtattccttatatccagagatgaaaattttgcatcattattcatgtgtatcgatattaca |
200 |
Q |
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| T |
43880104 |
tatatattctattccatttttgagattaggctatggagaagtattccttatatccagagatgaaaattttgcatcattattcatgtgtatcgatattaca |
43880203 |
T |
|
| Q |
201 |
gtttttacttagttttagttgtaatgtttatattctgacgttgtcccgtgattctactttgaatgatgcacaggagatgtatacgctgacattcaacctt |
300 |
Q |
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| T |
43880204 |
gtttttacttagttttagttgtaatgtttatattctgacgttgtcccgtgattctactttgaatgatgcacaggagatgtatacgctgacattcaacctt |
43880303 |
T |
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| Q |
301 |
ttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggtataaaccctcttgacata |
400 |
Q |
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| T |
43880304 |
ttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggtataaaccctcttgacata |
43880403 |
T |
|
| Q |
401 |
ttgattttatatttttcttaatgctattaaagaaaggccttat-----tgtacaaattaccttcttttctcagactggtccaaatggagcaacaagtgag |
495 |
Q |
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| T |
43880404 |
ttgattttatatttttcttaatgctattaaagaaaggccttattgtactgtacaaattaccttcttttctcagactggtccaaatggagcaacaagtgag |
43880503 |
T |
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| Q |
496 |
aaactcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttgaga |
595 |
Q |
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| T |
43880504 |
aaactcggtgttaattatcgagctctaaatgacctcttcagaatttccacaagcagaggaagcctcatagactatgagatttgggttcaaatggttgaga |
43880603 |
T |
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| Q |
596 |
tatataacgagcaagttcgtgacttgttatcaactgaggaatctccaaaaagatatccttttttaaaaatatctttagacaa |
677 |
Q |
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| T |
43880604 |
tatataacgagcaagttcgtgacttgttatcaactgaggaatctccaaagagatatccttttttaaaaatatctttagacaa |
43880685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 384
Target Start/End: Complemental strand, 31647691 - 31647605
Alignment:
| Q |
298 |
cttttgtaagatcggtactcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggtat |
384 |
Q |
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| T |
31647691 |
cttttataagatcagtacttgatggttataatgtttgtatatttgcttatggtcagacaggttcaggaaaaacttacacaatggtat |
31647605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 535
Target Start/End: Complemental strand, 31647336 - 31647266
Alignment:
| Q |
465 |
tcagactggtccaaatggagcaacaagtgagaaactcggtgttaattatcgagctctaaatgacctcttca |
535 |
Q |
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| T |
31647336 |
tcagagtggtccaaatggtgcatccaatgagaatcttggtgttaactatagagctctaaatgacctattca |
31647266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 44588312 - 44588247
Alignment:
| Q |
318 |
gatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggta |
383 |
Q |
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| T |
44588312 |
gatggctataatgtttgcatatttgcatatggccaaacaggatctggaaaaacttacacgatggta |
44588247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 39341465 - 39341533
Alignment:
| Q |
315 |
ctcgatggatataatgtatgtatattcgcttatggccaaaccgggtccggaaaaacttacacaatggta |
383 |
Q |
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| T |
39341465 |
ctcgatggttttaatgtttgcatatttgcttatggccaaacaggatcaggaaaaactttcaccatggta |
39341533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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