View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_12 (Length: 381)
Name: NF14780_low_12
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 35542897 - 35542555
Alignment:
| Q |
14 |
ataatactagagaaacaatggataacaataactcaacaaaaccacccataaattgatgataactacttagagtagaaagaaagaaaaacactcttaggaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
35542897 |
ataatactagagaaacaatggataacaataactcaacaaaaccacccataaattgatgataact---tagagtagaaagaaagaaaatcactcttaggaa |
35542801 |
T |
|
| Q |
114 |
attagggtttgacatgagtaactaatcttagtgtagagtatcatttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttccta |
213 |
Q |
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|||| ||||||||||||||||||| ||| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35542800 |
attaaggtttgacatgagtaactagtctcaatgaagggtatcatttaggagcatcttggctgtagcaccacaagtaagagcttctgtaggtactttccta |
35542701 |
T |
|
| Q |
214 |
attttatgaacagcctcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaa |
313 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35542700 |
attttatgaacaccttcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaa |
35542601 |
T |
|
| Q |
314 |
accttaatgcagtccaaccatacggaaatacaaccacagtgttcct |
359 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35542600 |
accttaatgcagtccaaccatacggaaatacaaccacggtgttcct |
35542555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 87 - 359
Target Start/End: Complemental strand, 35528332 - 35528060
Alignment:
| Q |
87 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaactaatcttagtgtagagtatcatttaggaacatcttggctgtagcaccacaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
35528332 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaactagtcttagtgtagggtatcgtttaggaacatcttggctgtagcaccacaa |
35528233 |
T |
|
| Q |
187 |
gtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35528232 |
gtaagagcttctgtaggtactttcctaattttatgaacaccttcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatg |
35528133 |
T |
|
| Q |
287 |
cccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcct |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
35528132 |
cccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatataactgcagtgttcct |
35528060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 158 - 359
Target Start/End: Complemental strand, 35510064 - 35509863
Alignment:
| Q |
158 |
ttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatatg |
257 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35510064 |
ttaggaacatctaggctgtagcaccacatttaagagcttctttaggtatgttcctaactttatgaacagcctcagcaaaaataacacccattcccatatg |
35509965 |
T |
|
| Q |
258 |
caaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||| |
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| T |
35509964 |
caaatgtggttcaatgtgacaatgaaatgcccaaacaccaggattatctgccttaaaccttagtgcagtccaaccatatggaaatataactgcagtgttc |
35509865 |
T |
|
| Q |
358 |
ct |
359 |
Q |
| |
|
|| |
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|
| T |
35509864 |
ct |
35509863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 157 - 360
Target Start/End: Complemental strand, 35954092 - 35953889
Alignment:
| Q |
157 |
tttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatat |
256 |
Q |
| |
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||||||||| |||| |||| ||| |||||| | |||| ||||| |||| ||||| |||||||| |||| | |||||||| |||||||||||| |||||| |
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| T |
35954092 |
tttaggaacttcttcgctggagcgccacaatttagagtgtctgtcggtattttccaaattttataaacaccatcagcaaatataacacccatttccatat |
35953993 |
T |
|
| Q |
257 |
gcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgtt |
356 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
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| T |
35953992 |
gcaaatgtggttcaacatgacaatgaaatgcccaaactccaggattatctgccttaaaccttaatgcagtccaaccatatggaaatgtaactgcagtgtt |
35953893 |
T |
|
| Q |
357 |
cctt |
360 |
Q |
| |
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|||| |
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|
| T |
35953892 |
cctt |
35953889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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