View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_14 (Length: 370)
Name: NF14780_low_14
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 26913463 - 26913803
Alignment:
| Q |
19 |
ggaggaggaagggaggacgcaaggatgttgaacaaaaagagaagaaagttaatgagaaacctttgctgagaaagaaccgccacggccatgcaaaacatat |
118 |
Q |
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| T |
26913463 |
ggaggaggaagagaggacgcaaggatgttgaacaaaaagagaagaaagttaatgagaaacctttgctgagaaacaaccgctacggccatgcaaaaaatat |
26913562 |
T |
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| Q |
119 |
tcgttatcattgtcacaagaagaatagtggaggtggttttccattggttccggttcagaaggatggtaaagaaacaacggttatgattaagaacattcct |
218 |
Q |
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| T |
26913563 |
tcgttatcattgtcacaagaagaatagtggaggtggttttccattggttccggttcagaaggatggtaaagaaacaacggttatgattaagaacattcct |
26913662 |
T |
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| Q |
219 |
agcaaatatacgtatgtttcattttcctttcatattcctactttaatactcattcattatgtgcatttatttctagttattctactttatggtttaaaac |
318 |
Q |
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| T |
26913663 |
agcaaatatacgtatgtttcattttcctttcatattcctactttaatattccttcattatgtgcatttatttctagttattctactttatggtttaaaac |
26913762 |
T |
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| Q |
319 |
tgcttttaaaatttaagacttatgcatgcatgattgttcat |
359 |
Q |
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| T |
26913763 |
tgcttttaaaatttaagacttatgcatgcatgattgttcat |
26913803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 3804461 - 3804182
Alignment:
| Q |
45 |
gttgaacaaaaagagaagaaagttaatgagaaacctttgctgagaaagaaccgccacggccatgcaaaacatattcgttatcattgtc---acaagaaga |
141 |
Q |
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| T |
3804461 |
gttgagcaaaaagagaagaaagttgatgatgagcgtttgatgagaaagaatcgccatcgccatgcaaaacatattcgtgatcattatcataagaagaaga |
3804362 |
T |
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| Q |
142 |
atagtggaggtggttttccattggttccggttcagaaggatggtaaagaaacaacggttatgat-taagaac-----attcctagcaaatatacgtatgt |
235 |
Q |
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| T |
3804361 |
atagtggaggtggttttcctgggattccggttcacaaaaatggtgaagaaacaacggttatgatagaaaaacattatattcctaccaaatattcgtatgt |
3804262 |
T |
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| Q |
236 |
ttcattttcctttcatattcctactttaata--------ctcattcattatgtgcatttatttctagttattctacttta |
307 |
Q |
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|||| ||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
3804261 |
ttcactttgctttcatattccttctttaatatgcattttcttcttcattatgtgcatttatttctagttattctacttta |
3804182 |
T |
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