View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14780_low_16 (Length: 349)

Name: NF14780_low_16
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14780_low_16
NF14780_low_16
[»] chr6 (1 HSPs)
chr6 (4-327)||(34774593-34774916)
[»] chr1 (1 HSPs)
chr1 (6-327)||(42748781-42749102)
[»] chr7 (2 HSPs)
chr7 (4-229)||(35024472-35024697)
chr7 (95-311)||(12825478-12825695)
[»] chr4 (2 HSPs)
chr4 (79-327)||(24189318-24189566)
chr4 (99-310)||(37035351-37035562)
[»] chr3 (2 HSPs)
chr3 (182-325)||(28571536-28571679)
chr3 (95-193)||(47820122-47820220)
[»] chr8 (1 HSPs)
chr8 (95-136)||(38553102-38553143)
[»] chr5 (1 HSPs)
chr5 (96-148)||(21016729-21016781)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 34774593 - 34774916
Alignment:
Q  4 ggatacggtccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaatactcgattattcctagc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774593 ggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaatactcgattattcctagc 34774692  T
Q  104 tttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaaggatgaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774693 tttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaaggatgaag 34774792  T
Q  204 aagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatgaattgatgatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774793 aagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatgaattgatgatt 34774892  T
Q  304 cgtccaccctttcacataaagcgc 327  Q
    ||||||||||||||||||||||||    
T  34774893 cgtccaccctttcacataaagcgc 34774916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 327
Target Start/End: Original strand, 42748781 - 42749102
Alignment:
Q  6 atacggtccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaatactcgattattcctagctt 105  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  42748781 atacgatccaaagaccaacgccacgatatcacctttatctcatccacaatctcgcccacctccgtaattcgattattaaatactcgattattcctagctt 42748880  T
Q  106 tccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaaggatgaagaa 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  42748881 tccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaaagaatgaagaa 42748980  T
Q  206 gttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatgaattgatgattcg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| ||| ||    
T  42748981 gttagggggaattaacatcatcctctcccaccaccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatgaattgaggatccg 42749080  T
Q  306 tccaccctttcacataaagcgc 327  Q
    ||||||||||||||||||||||    
T  42749081 tccaccctttcacataaagcgc 42749102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 35024472 - 35024697
Alignment:
Q  4 ggatacggtccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctatgtaatttgattattaaatactcgattattcctagc 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35024472 ggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatctcgcccacctccgtaatttgattattaaatactcgattattcctagc 35024571  T
Q  104 tttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaaggatgaag 203  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35024572 tttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaaaggatgaag 35024671  T
Q  204 aagttagggggaattaacatcatcct 229  Q
    ||||||||||||||||||||||||||    
T  35024672 aagttagggggaattaacatcatcct 35024697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 311
Target Start/End: Original strand, 12825478 - 12825695
Alignment:
Q  95 attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa 194  Q
    |||||| |||||||| || ||| || |||||| ||||| |||||| ||||| || |||||  ||| |||||||||||| || || |||||||||||||||    
T  12825478 attccttgctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 12825577  T
Q  195 aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga 293  Q
    || | ||| || ||||| ||||||||    | | | ||||| || |||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||||    
T  12825578 agaacgaataaattaggcggaattaaatgaaacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 12825677  T
Q  294 attgatgattcgtccacc 311  Q
    ||||| ||||| ||||||    
T  12825678 attgacgattcatccacc 12825695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 327
Target Start/End: Complemental strand, 24189566 - 24189318
Alignment:
Q  79 tattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctcc 178  Q
    ||||||| |||| ||||||||| ||  |||| |||||||| | ||| | |||||||||||| ||||  || |||||| |||||||||||  ||| || ||    
T  24189566 tattaaacactctattattcctcgcaatccacaacacccacaccgttgcatgccaaataagtcttaggcccttacgaattctcttattctgctcgccacc 24189467  T
Q  179 gcaccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaa 278  Q
     | |||||||||||||||   ||| ||||||||  ||||||| |  |||||||||| | ||| ||||| ||| ||||| || || || || || ||||||    
T  24189466 actccaacactcccaaagagcgaacaagttaggcagaattaagagaatcctctccccctaccgcataataccttgccacacccttcccgctacatcacaa 24189367  T
Q  279 tggagaaatagatgaattgatgattcgtccaccctttcacataaagcgc 327  Q
    || ||||| || |||||||| ||||| |||||||| |||||||||||||    
T  24189366 tgaagaaagaggtgaattgacgattcatccaccctctcacataaagcgc 24189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 310
Target Start/End: Complemental strand, 37035562 - 37035351
Alignment:
Q  99 ctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaaagga 198  Q
    |||||||||||||| ||||||||||||  ||||||||| |  ||||| || | |||| | | |||| |||||||||| || | |||||||||||| | ||    
T  37035562 ctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccctgacgaatacgcttaatcctctccccgccactccaacactcccataaga 37035463  T
Q  199 tgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatgaattga 298  Q
      || || ||||| |||||||  || | |||||||||||||||||||| | |  |||| || || || |||||||||||||||||||| |||||| ||||    
T  37035462 caaataaattaggcggaattacaataaacctctcccaccaccccataatatcacgccacacccttccggcaacctcacaatggagaaaaagatgagttga 37035363  T
Q  299 tgattcgtccac 310  Q
     ||||| |||||    
T  37035362 cgattcatccac 37035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 325
Target Start/End: Complemental strand, 28571679 - 28571536
Alignment:
Q  182 ccaacactcccaaaggatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccatactctaccagcaacctcacaatgg 281  Q
    ||||||||||||| | |  || || ||||| |||||||| |  |||||||||||||||| ||||| ||| ||||| || ||||| || || ||||||||     
T  28571679 ccaacactcccaatgcacaaataaattaggcggaattaagagaatcctctcccaccaccgcataataccttgccacaccctacctgctacatcacaatga 28571580  T
Q  282 agaaatagatgaattgatgattcgtccaccctttcacataaagc 325  Q
    || || || ||| |||| ||||| ||||||||||||||||||||    
T  28571579 aggaaaaggtgagttgaggattcatccaccctttcacataaagc 28571536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 47820220 - 47820122
Alignment:
Q  95 attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactccca 193  Q
    |||||||||||||||||| ||||||||||| | ||||||||| |  ||||| ||   |||| | ||||| ||||||||||| |||||||||||||||||    
T  47820220 attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactccca 47820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 38553143 - 38553102
Alignment:
Q  95 attcctagctttccataacacccaaatcgtagtatgccaaat 136  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  38553143 attcctagctttccacaacacccaaatcgtagtgtgccaaat 38553102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 21016729 - 21016781
Alignment:
Q  96 ttcctagctttccataacacccaaatcgtagtatgccaaataagccttaatcc 148  Q
    |||||||| ||||  |||||||||||||| ||||||||||||||||| |||||    
T  21016729 ttcctagccttccgcaacacccaaatcgttgtatgccaaataagcctcaatcc 21016781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University