View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_19 (Length: 328)
Name: NF14780_low_19
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 90 - 312
Target Start/End: Original strand, 45722694 - 45722916
Alignment:
| Q |
90 |
gacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaaattgaatagtttgtgcgttggtcatgctagaac |
189 |
Q |
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| T |
45722694 |
gacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaagttgaatagtttgtgcgttggtcatgctagaac |
45722793 |
T |
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| Q |
190 |
acctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaagactctggaagagataat |
289 |
Q |
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| T |
45722794 |
acctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaagactctggaagagataat |
45722893 |
T |
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| Q |
290 |
aaaggggatgaaagtgggaataa |
312 |
Q |
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| T |
45722894 |
aaaggggatgaaagtgggaataa |
45722916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45722581 - 45722649
Alignment:
| Q |
1 |
agtcaagggtgtgagttgtgatgtgagtgtcacaatgaagctggccttcttcttcaattctgttccccaaatgcatg |
77 |
Q |
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| T |
45722581 |
agtcaagggtgtgagttgtg-----agtgtcacaatgaagctggc---cttcttcaattatgttccccaaatgcatg |
45722649 |
T |
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