View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_2 (Length: 565)
Name: NF14780_low_2
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 15 - 548
Target Start/End: Complemental strand, 39964289 - 39963757
Alignment:
| Q |
15 |
gatatgaaacaaaacgggcccataataagcagccactacccggcccaacagtaacacagaagatttgcagggaagactgtgttttgagcgggaaacttag |
114 |
Q |
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| T |
39964289 |
gatacgaaacaatacgggcccataataagcagccactacccggcccaacagtaacacagaagatt-gtagggaagactgtgttttgagcgggaaacttag |
39964191 |
T |
|
| Q |
115 |
aagcaagttcgatcgaattcatagcaccatttctattttctttctgaaattgagaacgcagtgacacagaaaacaaagcataaaccatagaaaaagatct |
214 |
Q |
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| T |
39964190 |
aagcaagttcgatcgaattcatagcaccatttctattttctttctgaaattgagaacgcagtgacacagaaaacaaagcataaaccatagaaaaagatct |
39964091 |
T |
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| Q |
215 |
actagttagggtttaataaccatggcggaggagacttatgctatggacatcgacgttacagacaagggcaaaaccgtcattgccgccggtaacccttcct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964090 |
actagttagggtttaataaccatggcggaggagacttatgctatggacatcgacgtcacagacaagggcaaaaccgtcattgccgccggtaacccttcct |
39963991 |
T |
|
| Q |
315 |
tcggtggcaaagcttcgctatgggttgaaaagtatcgtcctcaatccctcgacgacgttgcagctcaccgcgacatcgttgacacaagtagctccctttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39963990 |
tcggtggcaaagcttcgctatgggttgaaaagtatcgtcctcaatccctcgacgacgttgcagctcaccgcgacatcgttgacacaagtaactccctttc |
39963891 |
T |
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| Q |
415 |
cctctctaacttcccctttcatttctagggtttatcgttcctttggtgtgttatttattttttgttgatttttgtgtgtatagttgataggttgactact |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39963890 |
cctctctaacttcccctttcatttctagggtttatcgttcctttggtgtgttatttattttttgttgatttttgtgtgtatagttgataggttgactact |
39963791 |
T |
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| Q |
515 |
gagaatagattaccccatctgctgttgtatggac |
548 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39963790 |
gagaatagattaccccatctgctgttgtatggac |
39963757 |
T |
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