View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14780_low_20 (Length: 305)
Name: NF14780_low_20
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_20 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 22879423 - 22879152
Alignment:
| Q |
19 |
agattatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctg |
118 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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|
| T |
22879423 |
agattatgtgtctgaagaggtggaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcag |
22879324 |
T |
|
| Q |
119 |
tatttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||| |
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|
| T |
22879323 |
tatttggagagggatatacctttgccagatttgtctttgcctagtttatcttcttctggattaacttttgggaacaaatatttttttgaggactttcctt |
22879224 |
T |
|
| Q |
219 |
tgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgattcacttctctctg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22879223 |
tgtcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctcttgctgattcacttctctctg |
22879152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 22813811 - 22813542
Alignment:
| Q |
21 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
22813811 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagta |
22813712 |
T |
|
| Q |
121 |
tttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttg |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
22813711 |
tttggagcgggatatacctttgccagatttgccttcgcttagtttatcttcttctggattaacttttgggtaccaagaatattttgaggactttcctttg |
22813612 |
T |
|
| Q |
221 |
tcttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgattcacttctctctg |
290 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||| ||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
22813611 |
tcgtatccttcttccatggacaagacaatgtcacatacttctgtttctatttctgattcacttctctctg |
22813542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 22897051 - 22896784
Alignment:
| Q |
23 |
tatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatt |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |
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|
| T |
22897051 |
tatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatt |
22896952 |
T |
|
| Q |
123 |
tggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtc |
222 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||| |
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|
| T |
22896951 |
tggaaagggatatacctttaccagatttgtctttgcttagtttatcttcttctggtttaacttttgggtaccaagaattttttgaggactttcctttgtc |
22896852 |
T |
|
| Q |
223 |
ttatccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgattcacttctctctg |
290 |
Q |
| |
|
||||||||||||||||| ||| | |||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
22896851 |
ttatccttcttctatgggcaacacaatgtcacacacctctgtgtctattgctgattcacttctctctg |
22896784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 22892733 - 22892468
Alignment:
| Q |
25 |
tgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttg |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
22892733 |
tgtgtctgaagaggtggagttggtgttgaaacttggattgttgtgttcacattcagaacctttggctagaccatgtatgagacaagttgtgcagtatttg |
22892634 |
T |
|
| Q |
125 |
gagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtctt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
22892633 |
gagagggatatacctttgccagatttgtctttgcttagtttatcttcttctggattaacttttgggtaccaagaattttttgaggactttcctttgtctt |
22892534 |
T |
|
| Q |
225 |
atccttcttctatggacaagaaaatgtcgcatacgtctgtgtctattgctgattcacttctctctg |
290 |
Q |
| |
|
||||||| ||||||| ||| | |||||| || || |||||||||||||| || ||| ||||||||| |
|
|
| T |
22892533 |
atccttcctctatgggcaacacaatgtcacagacttctgtgtctattgccgactcaattctctctg |
22892468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 22888082 - 22887907
Alignment:
| Q |
21 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgta |
120 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
22888082 |
attatgtgtctgaagaggtggaattggtgttgaaacttggcttgttgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtacagta |
22887983 |
T |
|
| Q |
121 |
tttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
22887982 |
tttggagagggatacacctttgccagatttttcttcgcttagtttatcttcttctggtttaacttttgggtaccaa |
22887907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 22829816 - 22829640
Alignment:
| Q |
20 |
gattatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgt |
119 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
22829816 |
gattatgtgtctgaggaggtcgagttggtgttgaaacttggattgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagt |
22829717 |
T |
|
| Q |
120 |
atttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||||||| |||||| ||| ||||||| ||||| |
|
|
| T |
22829716 |
atttggagagggatatacctttgccatatttgttttcgcttagtttatcttcttctggtttattttttgggtaccaa |
22829640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 22804120 - 22803945
Alignment:
| Q |
21 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgta |
120 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22804120 |
attatgtgtctgaagaggtggaattggtgttgaaacttggcttgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagta |
22804021 |
T |
|
| Q |
121 |
tttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
22804020 |
tttggagagggatttacctttaccagatttgtcattgcttagtttatcttcctatggattaacttttgggcaccaa |
22803945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 22808404 - 22808229
Alignment:
| Q |
21 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgta |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
22808404 |
attatgtgtctgaagaggttgaattggtgttgaaacttggcttgttgtgtttgcattcagagcctctggttagaccaagtatgagacaagttgtgcagta |
22808305 |
T |
|
| Q |
121 |
tttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
22808304 |
tttggagagggatatagctttgccagatttgtcttcgcttagtttatcttcttctggtttaacttttgggtaccaa |
22808229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 22838838 - 22838661
Alignment:
| Q |
19 |
agattatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| | |
|
|
| T |
22838838 |
agattatgtgtctgaagaggtggagttggtgttgaaacttggattgttgtgttctcattcagagcctttggctagaccaagtatgaggcaagttgtgcag |
22838739 |
T |
|
| Q |
119 |
tatttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||| ||||||||||||| || ||| |||||||||||| ||||| |
|
|
| T |
22838738 |
tatttggagacggatataccctttccagatttgtcttcgcttagtttatctacttttggtttaacttttgggtaccaa |
22838661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 22870612 - 22870443
Alignment:
| Q |
27 |
tgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttgga |
126 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22870612 |
tgtctgaagaggtggaattggtgttgaaacttggcttgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagtatttgga |
22870513 |
T |
|
| Q |
127 |
gagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
22870512 |
gagggatatacctttaccagctttgtcattgcttagtttatcttcctatggattaacttttgggcaccaa |
22870443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 22874712 - 22874537
Alignment:
| Q |
21 |
attatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgta |
120 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
22874712 |
attatgtgtctgaagaggtggaattggttttgaaacttggattgttgtgttctcattcagagcctttggctagaccaagcatgaggcaagttgtgcagta |
22874613 |
T |
|
| Q |
121 |
tttggagagggatatacctttgccagatttgtctttgcttagtttatcttattctggattaacttttgggaaccaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| |||||||||||| ||||| |
|
|
| T |
22874612 |
tttggagagggatatacctttgccagatttttcttcgcttagtttatcttcttttggtttaacttttgggtaccaa |
22874537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 22912444 - 22912331
Alignment:
| Q |
20 |
gattatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgt |
119 |
Q |
| |
|
||||||||| |||||| ||||| ||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| || || |
|
|
| T |
22912444 |
gattatgtggttgaagaagttgaattggttttgaaacttggtttgttatgttcacattgtgaggctttggctagaccaagtatgagacaagttttgaggt |
22912345 |
T |
|
| Q |
120 |
atttggagagggat |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22912344 |
atttggagagggat |
22912331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 21151932 - 21152086
Alignment:
| Q |
23 |
tatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatt |
122 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
21151932 |
tatgtgtctgaagaggtggaattggtgttgaaacttggcttgttgtgttcacattccgagcctttggctagaccaagtatgaggcaagttgtgcagtatt |
21152031 |
T |
|
| Q |
123 |
tggagagggatatacctttgccagatttgtctttgcttagtttatcttattctgg |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
21152032 |
tggagagggatatacctttgccagatttgtcttcacttagtttatcttcttctgg |
21152086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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