View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_22 (Length: 286)
Name: NF14780_low_22
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_22 |
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| [»] scaffold0515 (1 HSPs) |
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| [»] scaffold0306 (1 HSPs) |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: scaffold0515 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 639 - 354
Alignment:
| Q |
1 |
tcgttgatacacaactggctcctaaatccaaatgtctcatccttcaaacaaaggttaatttgttatcaagagagtcacaacttatttcataattacgtta |
100 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
639 |
tcgttgatacacaacaggctcctaaatccaaatgcctcatccttcaaacaaaggttacttggttatcaagagagtcacaacttatttcataattacgtta |
540 |
T |
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| Q |
101 |
aaaataagtatacagaccaaaagaacaagttaatgaacatagggaaattgtgatatcacagaggaataattgttctcatttcattgagaaagtcatagtt |
200 |
Q |
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| T |
539 |
aaaataagtatacaaaccaaaagagcaagttaatgaacatagggaacttgtgatatcacagagggataattgttctcatttcattgagaaagtcatagtt |
440 |
T |
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| Q |
201 |
aagtatacaaagagaccttatgtggttaacttgttctcnnnnnnncccactttccttctgcgccattatactcaaagtcataaaat |
286 |
Q |
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| T |
439 |
aagtatacaaagagaccttatgtggttaacttgttctctttttttcccactttccttctgcaccattatactcaaagtcataaaat |
354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 641 - 356
Alignment:
| Q |
1 |
tcgttgatacacaactggctcctaaatccaaatgtctcatccttcaaacaaaggttaatttgttatcaagagagtcacaacttatttcataattacgtta |
100 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
641 |
tcgttgatacacaacaggctcctaaatccaaatgcctcatccttcaaacaaaggttacttggttatcaagagagtcacaacttatttcataattacgtta |
542 |
T |
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| Q |
101 |
aaaataagtatacagaccaaaagaacaagttaatgaacatagggaaattgtgatatcacagaggaataattgttctcatttcattgagaaagtcatagtt |
200 |
Q |
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| T |
541 |
aaaataagtatacaaaccaaaagagcaagttaatgaacatagggaacttgtgatatcacagagggataattgttctcatttcattgagaaagtcatagtt |
442 |
T |
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| Q |
201 |
aagtatacaaagagaccttatgtggttaacttgttctcnnnnnnncccactttccttctgcgccattatactcaaagtcataaaat |
286 |
Q |
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| T |
441 |
aagtatacaaagagaccttatgtggttaacttgttctctttttttcccactttccttctgcaccattatactcaaagtcataaaat |
356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 18568 - 18853
Alignment:
| Q |
1 |
tcgttgatacacaactggctcctaaatccaaatgtctcatccttcaaacaaaggttaatttgttatcaagagagtcacaacttatttcataattacgtta |
100 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
18568 |
tcgttgatacacaacaggctcctaaatccaaatgcctcatccttcaaacaaaggttacttggttatcaagagagtcacaacttatttcataattacgtta |
18667 |
T |
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| Q |
101 |
aaaataagtatacagaccaaaagaacaagttaatgaacatagggaaattgtgatatcacagaggaataattgttctcatttcattgagaaagtcatagtt |
200 |
Q |
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|||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18668 |
aaaataagtatacaaaccaaaagagcaagttaaagaacatagggaacttgtgatatcacagagggataattgttctcatttcattgagaaagtcatagtt |
18767 |
T |
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| Q |
201 |
aagtatacaaagagaccttatgtggttaacttgttctcnnnnnnncccactttccttctgcgccattatactcaaagtcataaaat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
18768 |
aagtatacaaagagaccttatgtggttaacttgttctctttttttcccactttccttctgcaccattatactcaaagtcataaaat |
18853 |
T |
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