View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_24 (Length: 279)
Name: NF14780_low_24
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
59 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
158 |
Q |
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| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
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| Q |
159 |
taaaattgattaattataaacaatcacaatccaca |
193 |
Q |
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| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 23408328 - 23408379
Alignment:
| Q |
228 |
aggaggaatccaactatattttatgagaaaatgtattcagtctttgataccc |
279 |
Q |
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| T |
23408328 |
aggaggaatccaactatattttatgagaaaatgtattccgtctttgataccc |
23408379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 23408057 - 23408093
Alignment:
| Q |
13 |
atcaaattctaattctcagtcaaattacaaaataata |
49 |
Q |
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| T |
23408057 |
atcaaattctaattctcagtcaaattacaaaataata |
23408093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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