View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_27 (Length: 250)
Name: NF14780_low_27
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 670908 - 671092
Alignment:
| Q |
10 |
aagaaaataactagtatccatcaacgagttgataacataactgatgaaaagaaatctgagtttgattttcaaaaactctaattatgatgagttagaaaga |
109 |
Q |
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| T |
670908 |
aagaaaataactagtatctatcaacgagttgataacataactgatgaaaagaaatctgagtttgattttcaaaaactctaattatgatgagttagaaaga |
671007 |
T |
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| Q |
110 |
agnnnnnnnctaactagtatccatgtaataaatatgtcataannnnnnnnatataaaatggaaaaactaaggttgagatttttcat |
195 |
Q |
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| T |
671008 |
agaaaaaaactaactagtatccatgtaataaatatgtcataa-tttttttatataaaatggaaaaactaaggttgagatttttcat |
671092 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 671111 - 671140
Alignment:
| Q |
214 |
ctgaggtatttcttggtccacatgtaaggg |
243 |
Q |
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| T |
671111 |
ctgaggtatttcttggtccacatgtaaggg |
671140 |
T |
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