View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_32 (Length: 236)
Name: NF14780_low_32
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_32 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 39083426 - 39083201
Alignment:
| Q |
11 |
agacgataacaaaaactttttctctaatatttgtaattacgtactttacaatacacacttctatcctacatcgccctttatgggaatgcacgtcactttt |
110 |
Q |
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| T |
39083426 |
agacgataacaaaaactttttctctaatatttgtaattacgtactttacaatacacacttctatcctacattgccctttatgggaatgcacgtcactttt |
39083327 |
T |
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| Q |
111 |
ctaatagatattgatattcctcattctcattaggaaatcaaattctggaatgcaaaaatttctaaacaaacttttttaagttaattgttttctcggaaca |
210 |
Q |
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| T |
39083326 |
ctaatagatattgatattcctcattctcattaggaaaccaaattctggaatgcaaaaatttctaaacaaacttttttaagttaattgttttctcggaaca |
39083227 |
T |
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| Q |
211 |
gtgataccagtctagtagtagcattg |
236 |
Q |
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||||||||| |||||||||||||||| |
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| T |
39083226 |
gtgataccaatctagtagtagcattg |
39083201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 31728256 - 31728069
Alignment:
| Q |
16 |
ataacaaaaactttttctctaatatttgtaattacgtactttacaatacacacttctatcctacatcgccctttatgggaatgcacgtcacttttctaat |
115 |
Q |
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|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
31728256 |
ataacataaactttttctctaatattcgtaattaagtactttacaacacacacttctatcctacatcgccctttatgggaatgcatgttactttcctaat |
31728157 |
T |
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| Q |
116 |
agatattgatattcctcattctcattaggaaatcaaattctggaatgcaaaaatttctaaacaaacttttttaagttaattgttttct |
203 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||| ||| |||| ||| || |||||| || |||||||||||||||| |
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| T |
31728156 |
cgatatttgtattcctcattctcattaggaaaccaaattctggattgccaaaaattcaaactaaacttattcaagttaattgttttct |
31728069 |
T |
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