View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_34 (Length: 232)
Name: NF14780_low_34
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 39815672 - 39815875
Alignment:
| Q |
13 |
caagaatatgccataaaattaaccatcaactgacatactgatcttaaggatcaatatcataactcatacgattatgttataaatttcaaccaaaacatga |
112 |
Q |
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| T |
39815672 |
caagaaaatgccataaaattaaccatcaactgacatactgatcttaaggatcaatatcataactcatacgattatgttataaatttcaaccaaaacatga |
39815771 |
T |
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| Q |
113 |
ttgcaatcattcatcaataacataaacaaagtagcgggagtaagcatgttcttacagtttcaaagagaacaaaatgatatggatgaggtttggtacgcga |
212 |
Q |
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| T |
39815772 |
ttgcaatcattcatcaataacataaacaaagtagcgggagtaagcatattcttacagtttcaaagagaacaaaatgatatggatgaggtttggtacacga |
39815871 |
T |
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| Q |
213 |
tttg |
216 |
Q |
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|||| |
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| T |
39815872 |
tttg |
39815875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 39922932 - 39923124
Alignment:
| Q |
22 |
gccataaaattaaccatcaactgacatactgatcttaaggatcaatatcataactcatacgattatgttataaa---tttcaaccaaaaca--------t |
110 |
Q |
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| T |
39922932 |
gccataaaattaaccatcaattgacattctcagctcaaaaatcaatattacaactcatactattatgttatataatatttcaaccaacacacaattgcat |
39923031 |
T |
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| Q |
111 |
gattgcaatcattcatcaataacataaacaaagtagcgggagtaagcatgttcttacagtttcaaagagaacaaaatgatatggatgaggttt |
203 |
Q |
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| T |
39923032 |
tattgcaatcattcatcaataacataaacaaagtagagggagtaagcatgttcttacagtttcaaagagaacaaaatgatatggatgaggttt |
39923124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 39806472 - 39806587
Alignment:
| Q |
78 |
atacgattatgttataaatttcaaccaaaacatgattgcaatcattcatcaataacataaacaaagtagcgggagtaagcatgttcttacagtttcaaag |
177 |
Q |
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| T |
39806472 |
atactattatgttataaatttcaaccaaaacatgattgtaatcattcatcgataac--aaacaatgttgagggagtaagcatattcttacagtttcaaag |
39806569 |
T |
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| Q |
178 |
agaacaaaatgatatgga |
195 |
Q |
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| T |
39806570 |
agaacaaaatgatatgga |
39806587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 4753614 - 4753752
Alignment:
| Q |
62 |
atcaatatcataactcatacgattatgttataaatttcaaccaaaacatgattgcaatcattcatcaataacataaacaaagtagcgggagtaagcatgt |
161 |
Q |
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| T |
4753614 |
atcaatatcataactcatactattatgatataaatg-caaccaaa-cacaattgaaatcattcatcaataacataaacaaaatagagggattaagcatat |
4753711 |
T |
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| Q |
162 |
tcttacagtttcaaagagaacaaaatgatatggatgaggtt |
202 |
Q |
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| T |
4753712 |
tcttacagtttcaaagagagggaaatgagagggatgaggtt |
4753752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 4740560 - 4740627
Alignment:
| Q |
113 |
ttgcaatcattcatcaataacataaacaaagtagcgggagtaagcatgttcttacagtttcaaagaga |
180 |
Q |
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||||||||| |||||||||||||||||||||||| ||| || |||| ||||||| |||||||||||| |
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| T |
4740560 |
ttgcaatcaatcatcaataacataaacaaagtagaaggaataggcatattcttacggtttcaaagaga |
4740627 |
T |
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