View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_36 (Length: 224)
Name: NF14780_low_36
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15679077 - 15678938
Alignment:
| Q |
1 |
agaataggaagaaaaggaaacgagtccttcaagaaaaagattttgaaaactctacaacttacaagcaataaaaacatacgtataacataacaaatttata |
100 |
Q |
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| T |
15679077 |
agaataggaagaaaaggaaaagagtccttcaagaaaaagattttgaaaactctacaa-------gcaataagaacatacgtataacataacaaatttata |
15678985 |
T |
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| Q |
101 |
gatatgattggaagaaaaaagccaaaactgcaaacgaaggagcagta |
147 |
Q |
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| T |
15678984 |
gatatgattggaagaaaaaagccaaaactgcaaacgaaggagcagta |
15678938 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 15678875 - 15678811
Alignment:
| Q |
146 |
tataatattaattaataaattaaaccatgtgtttattttgatgcttaacacatgcatgtattaag |
210 |
Q |
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| T |
15678875 |
tataatattaattaataaattaaaccacgtgtttattttgatgcttatcacatgcatgaattaag |
15678811 |
T |
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