View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_37 (Length: 217)
Name: NF14780_low_37
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 3816515 - 3816699
Alignment:
| Q |
18 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3816515 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgcttacccaattaaaattgaataaagctaataccggaa |
3816614 |
T |
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| Q |
118 |
ctgaattaaacccaaatattcacataacnnnnnnntgtagaaagccaatacacgattttaatttataaatatatatatctacctttg |
204 |
Q |
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| T |
3816615 |
ctgaattaaacccaaatattgacataacaaaaaaatgtagaaagccaatacacgattttaatttataaatat--atatctacctttg |
3816699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 346843 - 346716
Alignment:
| Q |
18 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaa |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
346843 |
tgcatatcaattttctcaatacaaagatggttgatgctgaaggagccacaagcgtataacatgcttacccaattaaaattgaataatgctaataccggaa |
346744 |
T |
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| Q |
118 |
ctgaattaaacccaaatattcacataac |
145 |
Q |
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| T |
346743 |
ctgaattaaacccaaatattgacataac |
346716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 48161947 - 48161820
Alignment:
| Q |
18 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaa |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48161947 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgcttacccaattaaaattgaataaagctaataccggaa |
48161848 |
T |
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| Q |
118 |
ctgaattaaacccaaatattcacataac |
145 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
48161847 |
ctgaattaaacccaaatattgacataac |
48161820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 10766035 - 10766162
Alignment:
| Q |
18 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaa |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10766035 |
tgcatatcaattttctcaatacaaagatggctgatgctgaaggagccacaagcgtataacatgcttacccaattaaaattgaataaagctaataccggaa |
10766134 |
T |
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| Q |
118 |
ctgaattaaacccaaatattcacataac |
145 |
Q |
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||||||||||| |||||||| ||||||| |
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| T |
10766135 |
ctgaattaaacgcaaatattgacataac |
10766162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 31052559 - 31052511
Alignment:
| Q |
154 |
gtagaaagccaatacacgattttaatttataaatatatatatctacctt |
202 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
31052559 |
gtagaaaaccaatacacgattttgatttataaatatatatatatacctt |
31052511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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