View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_38 (Length: 216)
Name: NF14780_low_38
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 38370461 - 38370267
Alignment:
| Q |
18 |
aattatagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatc------acgtgcaatgccacttttgaaat |
111 |
Q |
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| T |
38370461 |
aattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatcgaaatcacgtgcaatgccacttttgaaat |
38370362 |
T |
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| Q |
112 |
atccttttttctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggtcgtctgtgctcct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
38370361 |
atccttttttctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggtcgtgtgtgttcct |
38370267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 38363994 - 38363804
Alignment:
| Q |
18 |
aattatagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttga------aatcacgtgcaatgccacttttgaaat |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38363994 |
aattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatcgaaatcacgtgcaatgccacttttgaaat |
38363895 |
T |
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| Q |
112 |
atccttttttctatct---------atatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggt |
193 |
Q |
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|||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
38363894 |
atccttttatatatctatatctatcatatgctatatccagagtgttatcctcatataatggtgcctattggtaatcaatattcctcttggt |
38363804 |
T |
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