View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14780_low_5 (Length: 457)
Name: NF14780_low_5
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 27349485 - 27349928
Alignment:
| Q |
1 |
cccatttatgaatatacccttctttgcaatgataggaggttcctgcatcaatgttagtatagtcaatttccatcaacaccaataaaacatctttgagaaa |
100 |
Q |
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| T |
27349485 |
cccatttatgaatatacccttctttgcaatgataggaggttcctgcatcaatgttagtatagtcaatttccatcaacaccaataaaacatctttgaaaaa |
27349584 |
T |
|
| Q |
101 |
ttgtaaaataaaattgaagcactcaatatggctcaatatgttcctccatagattttgagcaaacattcaatgtggtcctccaatgattacagcattgtca |
200 |
Q |
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| T |
27349585 |
ttgtaaaataaaattgaagcactcaatatggctcaatatgttcctccatagattttgagcaaacattcaatgtggtcctccaatgattacagcattgtca |
27349684 |
T |
|
| Q |
201 |
cattaaacattcattgatttttgccactaaattagtgcttaaaatttgaaatgtcaccatattattcctctaaagtttattttgatgaattagtcctcaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27349685 |
cattcaacattcattgatttttgccactaaattagtgcttaaaatttgaaatgtcaccatattattcctctaaagtttattttgatgaattagtcctcaa |
27349784 |
T |
|
| Q |
301 |
agatataatattgtcaccaaataaagaatttcataaaaatcagtacatgttagtaatcataaaagtttactcacttcatattcttcaaagacatgatcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27349785 |
agatataatattgtcaccaaataaagaatttcataaaaatcagtacattttagtaatcataaaagtttactcacttcatattcttcaaagacatgatcct |
27349884 |
T |
|
| Q |
401 |
caatcactacaatgtttgaattaactgttggtggtggatgaaga |
444 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27349885 |
caatcaccacaatgtttgaattaactgttggtggtggatgaaga |
27349928 |
T |
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