View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14780_low_8 (Length: 409)
Name: NF14780_low_8
Description: NF14780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14780_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 16177070 - 16176694
Alignment:
| Q |
16 |
tattctatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatatcatacaaatttatcgtatttcctctaagatcaaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16177070 |
tattctatcaattaattggtgaataaaatcatgaagagaatgcatttgaaatagctatgaatatcatacaaatttattgtatttcctctaagatcaaatt |
16176971 |
T |
|
| Q |
116 |
caacgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgcaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16176970 |
caacgatcataggaacaaagacaaagaatcataccaaaggcatcgacacaattcccagaacccgttttactatatcgactaacacaccttttgttgcaac |
16176871 |
T |
|
| Q |
216 |
attcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgcataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16176870 |
attcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgcataa |
16176771 |
T |
|
| Q |
316 |
gttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttctt |
392 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16176770 |
gttgtagtatgaacatgatgatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttctt |
16176694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 16146717 - 16146387
Alignment:
| Q |
16 |
tattctatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatatcatacaaatttatcgtatttcctctaagatcaaatt |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||| | |
|
|
| T |
16146717 |
tattctatcaattaattgatgaataaaatcatgaagataatacatttgaaatagctatgaatatcatacatacttattgtatttcctttaagatcaaact |
16146618 |
T |
|
| Q |
116 |
caacgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgcaac |
215 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16146617 |
caacgatcataggaacaaaggcaaagactcatatcaagggcatcaacacacttcccaacacccgttttactatatctactaacacaccttttgttgcaac |
16146518 |
T |
|
| Q |
216 |
attcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgcataa |
315 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
16146517 |
aatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtggtgtcaatccaggtggtggctgatcataagtacaagtgcataa |
16146418 |
T |
|
| Q |
316 |
gttgtagtatgaacatgaggatcctaaaaca |
346 |
Q |
| |
|
||| ||| |||||||||| |||||||||||| |
|
|
| T |
16146417 |
gttatagaatgaacatgacgatcctaaaaca |
16146387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 21 - 388
Target Start/End: Complemental strand, 16155349 - 16154977
Alignment:
| Q |
21 |
tatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatat--catacaaatttatcgtatttcctctaagatcaaattcaa |
118 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||| |||| | |||| ||||||||| |||||||||| |||| |
|
|
| T |
16155349 |
tatcaattaattgatgaataaaatcacgaagagaatacatttgaaatcgctaggaatatatcatatatgcttattgtatttcctttaagatcaaactcaa |
16155250 |
T |
|
| Q |
119 |
cgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgcaacatt |
218 |
Q |
| |
|
||| |||| ||||| |||| || |||| |||||||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||| | |
|
|
| T |
16155249 |
cgaagatagttacaaatgcaaaaaagcatatgaaaggcattaacacagaccccagcacctgttttactatatctactaacacactttttgttgcaacaat |
16155150 |
T |
|
| Q |
219 |
catcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgtt---aatcctggtggtggcttatcaaaagtacaagtgcataa |
315 |
Q |
| |
|
|| | |||||||| || |||||||||||||||||||| ||||| ||||| ||||| | ||| |||||||||||| |||| || ||||||||||||| |
|
|
| T |
16155149 |
cacttagacagtcatcagtgcaaattcccatcccaatatcacaatgaccagttggtgatgataatgctggtggtggctgatcataactacaagtgcataa |
16155050 |
T |
|
| Q |
316 |
gttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatct |
388 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
16155049 |
gttgtagaatgaacatgaggatcctaaaacagcaacaccttttccatatgcttgacaatgagttgcacaatct |
16154977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 16271248 - 16271139
Alignment:
| Q |
277 |
taatcctggtggtggcttatcaaaagtacaagtgcataagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatga |
376 |
Q |
| |
|
|||||||||||| | | |||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16271248 |
taatcctggtggagaccgatcaaaagcacaggtgcataagttgtagaatgaacatgaagatcctaaaacagcaacaccttttgcatatgattgacaatga |
16271149 |
T |
|
| Q |
377 |
gttgcacaat |
386 |
Q |
| |
|
|||||||||| |
|
|
| T |
16271148 |
gttgcacaat |
16271139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 386
Target Start/End: Complemental strand, 16289334 - 16289243
Alignment:
| Q |
295 |
atcaaaagtacaagtgcataagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaat |
386 |
Q |
| |
|
|||||||| |||| ||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16289334 |
atcaaaagcacaaatgcataagtcgtagaatgaacatgatgatcctaaaacagcaacatcttttgcatatgattgacaatgaactgcacaat |
16289243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University