View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_high_2 (Length: 427)
Name: NF14781_high_2
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 4349051 - 4348637
Alignment:
| Q |
1 |
catctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataacccccttgttaaagttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4349051 |
catctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataatccccttgttaaagttt |
4348952 |
T |
|
| Q |
101 |
aagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaactatattagatgctcttgccaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4348951 |
aagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaactatattagatgctcttgccaatga |
4348852 |
T |
|
| Q |
201 |
atgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaattatgacttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348851 |
atgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaattatgacttgaa |
4348752 |
T |
|
| Q |
301 |
gcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348751 |
gcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttct |
4348652 |
T |
|
| Q |
401 |
ggacttgtactaaag |
415 |
Q |
| |
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| T |
4348651 |
ggacttgtactaaag |
4348637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 25745004 - 25745408
Alignment:
| Q |
1 |
catctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaagaaataacccccttgttaaagttt |
100 |
Q |
| |
|
||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| |||||||| |
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| T |
25745004 |
catctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatgaaataatcaccttgataaagttt |
25745101 |
T |
|
| Q |
101 |
aagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaactatattagatgctcttgccaatga |
200 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||| ||| | ||| ||||||||||||||||||||| |
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| T |
25745102 |
aagtggtttgattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagctaaattagatgctcttgccaatga |
25745193 |
T |
|
| Q |
201 |
atgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaattatgacttgaa |
300 |
Q |
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|||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
25745194 |
atgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactggtttaagtaatgatgacttgaa |
25745293 |
T |
|
| Q |
301 |
gcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttct |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25745294 |
gcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccacaaacacagttggttgtgttct |
25745393 |
T |
|
| Q |
401 |
ggacttgtactaaag |
415 |
Q |
| |
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||||||||||||||| |
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|
| T |
25745394 |
ggacttgtactaaag |
25745408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 18928523 - 18928653
Alignment:
| Q |
299 |
aagcatacctgagaaagatggaggactct---agaagtatgaggatccaagccaccaactttagtcatagat-----------ggatattgccacaaaca |
384 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| ||||||||| | ||||||||||||||| |
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| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatgatggatattggcatattgccacaaaca |
18928622 |
T |
|
| Q |
385 |
cagttggttgtgttctggacttgtactaaag |
415 |
Q |
| |
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||||||||| |||| |||| ||||||||||| |
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| T |
18928623 |
cagttggttatgttttggatttgtactaaag |
18928653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 36840973 - 36841023
Alignment:
| Q |
365 |
gatggatattgccacaaacacagttggttgtgttctggacttgtactaaag |
415 |
Q |
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|||||||||||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
36840973 |
gatggatattgccacaaacacagttggtaatgttttggatttgtactaaag |
36841023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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