View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_high_3 (Length: 414)
Name: NF14781_high_3
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 189 - 365
Target Start/End: Complemental strand, 49472071 - 49471899
Alignment:
| Q |
189 |
gaaacttaacagtgagaggagtgagtgagtgataattaaagaaacagtagagtacaggagaaaacggggttccttccttctttccttcaagttgaaattt |
288 |
Q |
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| T |
49472071 |
gaaacttaacagtgagaggagtgagtga----taattaaagaaacagtagagtacaggagaaaacggggttccttccttctttccttcaagttgaaattt |
49471976 |
T |
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| Q |
289 |
aattgtccagatcagatcatgtcgctttccactaatagtcgcacaaggtcacattctttctacggggtgggtgatgg |
365 |
Q |
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| T |
49471975 |
aattgtccagatcagatcatgtcgctttccactaatagtcgcacaaggtcacattctttctacggggtgggtgatgg |
49471899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 49472228 - 49472107
Alignment:
| Q |
19 |
tatgtatgtatgtatctatgaaaagaggaatagaagcagcaacacagtggtgagagatctgagagaccgaccaacaagatccgaaagattcaaactgttg |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49472228 |
tatgtatgtatgtatctatgaaaagaggaatagcagcagcaacatagtggtgagagatctgagagaccgaccaacaagatccgaaagattcaaacagttg |
49472129 |
T |
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| Q |
119 |
ttttgatttatcttcttctatc |
140 |
Q |
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| T |
49472128 |
ttttgatttatcttcttctatc |
49472107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 49471904 - 49471872
Alignment:
| Q |
382 |
tgatgggtatgtatgtgcaatcaattctctctc |
414 |
Q |
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| T |
49471904 |
tgatgggtatgtatgtgcaatcaattctctctc |
49471872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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