View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_high_5 (Length: 357)
Name: NF14781_high_5
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 34882260 - 34881921
Alignment:
| Q |
1 |
aagagagtgttgctagcatttctcttatatataatatcagaaaattttccttttaggtcatcagattctacattctatgaatcaccacgattcgtaacac |
100 |
Q |
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| T |
34882260 |
aagagagtgttgctagcatttctcttatatataatatcagaaaattttccttttaggtcatcagattctacattctatgaatcaccacgattcgtaacac |
34882161 |
T |
|
| Q |
101 |
acattgatgaccctgcaattgctgctctaactaagtattactccaaagttttcccacctagcaatactcctggagtaagcattttggatatgtgtagcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34882160 |
acattgatgaccctgcaattgctgctctaactaagtattactccaaagttttcccacctagcaatactcctggagtaagcattttggatatgtgtagcag |
34882061 |
T |
|
| Q |
201 |
ttgggtaagaaatttagtattgttactcgttttcttttctctaccttagcaatacacatattgtcataactcataaatcttcactttgcattaggtcagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34882060 |
ttgggtaagaaatttagtattgttactcgttttcttttctctaccttagc-atacacatattgtcataactcataaatcttcactttgcattaggtcagc |
34881962 |
T |
|
| Q |
301 |
cattttccacccggatacaagcaagaacgagttgtaggatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34881961 |
cattttccacccggatacaagcaagaacgagttgtaggatt |
34881921 |
T |
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